RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 KIAA1456Q9P272 454 aa6.14□□□□□ -1.43
VPS13C-206ENST00000558338 SHANK1Q9Y566 2161 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 CNTRLQ7Z7A1 2325 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 WDR87Q6ZQQ6 2873 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PROB1E7EW31 1015 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 IFNL4K9M1U5 179 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 CDIPTO14735 213 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 TXNL1O43396 289 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 TIMM8AO60220 97 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SCAF4O95104 1147 aaKnown RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 OR8U8P0C7N1 319 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 EPHA1P21709 976 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 GCH1P30793 250 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PSG7Q13046 419 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ADIPOQQ15848 244 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 EIF2S3LQ2VIR3 472 aaKnown RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SMIM21Q3B7S5 101 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF718Q3SXZ3 478 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 MYPOPQ86VE0 399 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 GCNT2Q8N0V5 402 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF645Q8N7E2 425 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SCGB1C1Q8TD33 95 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 GALMQ96C23 342 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PARD6GQ9BYG4 376 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ASCL3Q9NQ33 180 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 BIN3Q9NQY0 253 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ZMAT5Q9UDW3 170 aaKnown RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 CACNG5Q9UF02 275 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PROCRQ9UNN8 238 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 LAMP3Q9UQV4 416 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SPEGQ15772 3267 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 MED13Q9UHV7 2174 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ZNF407Q9C0G0 2248 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 A0A1W2PR80 420 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 NKX2-8O15522 239 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SYNGR2O43760 224 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SCGB1D1O95968 90 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 GRPP07492 148 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 OMGP23515 440 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 KIR2DL2P43627 348 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 RAB13P51153 203 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 RAB5BP61020 215 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 P2RY6Q15077 328 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 IGFBP7Q16270 282 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 MAJINQ3KP22 176 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 ACSF3Q4G176 576 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 AWAT1Q58HT5 328 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 MBNL2Q5VZF2 373 aaKnown RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 VASH2Q86V25 355 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 DEFB124Q8NES8 71 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 TMEM171Q8WVE6 324 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PSMG3Q9BT73 122 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 SCRT1Q9BWW7 348 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PARP12Q9H0J9 701 aaKnown RBP6.13□□□□□ -1.43
VPS13C-206ENST00000558338 RPS10P5Q9NQ39 176 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 OR14J1Q9UGF5 321 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 PPP1R3CQ9UQK1 317 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 MMP24Q9Y5R2 645 aa6.13□□□□□ -1.43
VPS13C-206ENST00000558338 DNAJC13O75165 2243 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 TRAV1-1A0A0B4J248 108 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 A0A0G2JRQ6 117 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 RBFOX3A6NFN3 312 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 C1QTNF9BB2RNN3 333 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 C9JQL5 133 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 M0R036 132 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 SIAH2O43255 324 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 NDUFA2O43678 99 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 WDR1O75083 606 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 CST7O76096 145 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 IGLV1-44P01699 117 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 MT-ND4LP03901 98 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 SNRNP70P08621 437 aaKnown RBP6.12□□□□□ -1.43
VPS13C-206ENST00000558338 IL2RGP31785 369 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 MPV17P39210 176 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 CEACAM6P40199 344 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 PAX9P55771 341 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 ERVS71-1P61550 626 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 PAX5Q02548 391 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 RNF212Q495C1 297 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 SOHLH1Q5JUK2 328 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 ACP7Q6ZNF0 438 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 C5orf24Q7Z6I8 188 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 DRAM1Q8N682 238 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 TMEM217Q8N7C4 229 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 WDR31Q8NA23 367 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 C9orf106Q8NAJ2 232 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 RXFP4Q8TDU9 374 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 TAAR6Q96RI8 345 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 SEBOXQ9HB31 216 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-206ENST00000558338 PSENENQ9NZ42 101 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 FBXO7Q9Y3I1 522 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 KLF2Q9Y5W3 355 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-206ENST00000558338 ESPL1Q14674 2120 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 MED12LQ86YW9 2145 aa6.12□□□□□ -1.43
VPS13C-206ENST00000558338 A0A1B0GWJ7 208 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 KIAA1324LA8MWY0 1029 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-206ENST00000558338 MLNRO43193 412 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 CEACAM4O75871 244 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 C1QL1O75973 258 aa6.11□□□□□ -1.43
VPS13C-206ENST00000558338 LY86O95711 162 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms