RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 AMY2BP19961 511 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 NFYAP23511 347 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 S100A11P31949 105 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 PITPNAQ00169 270 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 DOC2BQ14184 412 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 RBM39Q14498 530 aaKnown RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 ANKRD39Q53RE8 183 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 PAN3Q58A45 887 aaKnown RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 DMKNQ6E0U4 476 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 OR51A4Q8NGJ6 313 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 OR5D18Q8NGL1 313 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 OR1S1Q8NH92 325 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ZNF596Q8TC21 504 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 PHYHIPQ92561 330 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 CXorf58Q96LI9 332 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 C19orf12Q9NSK7 152 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 NUDT15Q9NV35 164 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 TAS2R4Q9NYW5 299 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 TAS2R3Q9NYW6 316 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 IGKV1-27A0A075B6S5 117 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 NAP1L6A6NFF2 107 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 FAM74A7A6NL05 159 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 MCRIP1C9JLW8 97 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 E9PI62 339 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 SIRPB1O00241 398 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 SSNA1O43805 119 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ZNF737O75373 536 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ARL6IP5O75915 188 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ATG12O94817 140 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 OR2H2O95918 312 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 UBBP0CG47 229 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 SELLP14151 372 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 CELP19835 753 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 CXCL3P19876 107 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 LMO1P25800 156 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 BTCP35070 178 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 SAA4P35542 130 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 RBMXP38159 391 aaKnown RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 PTGFRP43088 359 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 PRRX1P54821 245 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 RPS27AP62979 156 aaKnown RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 HOXA4Q00056 320 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 P2RY14Q15391 338 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 FAM189A2Q15884 450 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 MPV17LQ2QL34 196 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 LRRC75BQ2VPJ9 315 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 FAM74A3Q4VXF1 159 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 KRBOX4Q5JUW0 171 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 DNLZQ5SXM8 178 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 MINOS1Q5TGZ0 78 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 RUSC1-AS1Q66K80 236 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 GLT8D1Q68CQ7 371 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 DUX4L9Q6RFH8 374 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 JAGN1Q8N5M9 183 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 BEND2Q8NDZ0 799 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 OR10AC1Q8NH08 325 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 RPS4Y2Q8TD47 263 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 AKR1E2Q96JD6 320 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ZNF649Q9BS31 505 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 THAP7Q9BT49 309 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 TINAGL1Q9GZM7 467 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 CST11Q9H112 138 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ALX4Q9H161 411 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 NCOR1P1Q9H4R4 102 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 ZFP57Q9NU63 452 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 IL36GQ9NZH8 169 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 COMMD3Q9UBI1 195 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 VPREB3Q9UKI3 123 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 AMMECR1Q9Y4X0 333 aaPredicted RBP7.1□□□□□ -1.27
USP3-208ENST00000558285 MMP24Q9Y5R2 645 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 MINOS1-NBL1R4GNA1 71 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 COL6A5A8TX70 2615 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 VPS13CQ709C8 3753 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 A0A0U1RQK1 487 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 C17orf98A8MV24 154 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 G3V3Q6 166 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 RNASEK-C17orf49H0YIS7 233 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 OR2A4O95047 310 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 NDUFA7O95182 113 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 ARG1P05089 322 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 GLAP06280 429 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 FCER2P06734 321 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 COX7A1P24310 79 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 BRS3P32247 399 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 IER3P46695 156 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 CEBPDP49716 269 aaPredicted RBP7.09□□□□□ -1.27
USP3-208ENST00000558285 SMCPP49901 116 aaPredicted RBP7.09□□□□□ -1.27
USP3-208ENST00000558285 SNU13P55769 128 aaKnown RBP7.09□□□□□ -1.27
USP3-208ENST00000558285 DEFA5Q01523 94 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 MXD1Q05195 221 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 TMEM30BQ3MIR4 351 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 AWAT1Q58HT5 328 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 C22orf42Q6IC83 251 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 CCDC144NLQ6NUI1 221 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 ATRAIDQ6UW56 229 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 BATF2Q8N1L9 274 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 OSR2Q8N2R0 312 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 RNASE11Q8TAA1 199 aaKnown RBP7.09□□□□□ -1.27
USP3-208ENST00000558285 NEK7Q8TDX7 302 aa7.09□□□□□ -1.27
USP3-208ENST00000558285 MALSU1Q96EH3 234 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms