RNA–Protein interactions for RNA: ENST00000545920.1

SNHG1-225, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 625 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-225	ENST00000545920	IGSF11	Q5DX21	431 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	CXorf66	Q5JRM2	361 aa	Predicted RBP	5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	LYSMD4	Q5XG99	296 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	OR2T2	Q6IF00	324 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	GUSBP11	Q6P575	273 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	PCSK4	Q6UW60	755 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	ZNF600	Q6ZNG1	722 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	NUFIP2	Q7Z417	695 aa	Known RBP	5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	WFDC3	Q8IUB2	231 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	DEFB119	Q8N690	84 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	ZNF525	Q8N782	197 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	OR10D3	Q8NH80	312 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	AKR7L	Q8NHP1	331 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	CA5BP1	Q8WTZ4	195 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	OR5B12	Q96R08	314 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	ACTR3C	Q9C0K3	210 aa	Predicted RBP	5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	WDR61	Q9GZS3	305 aa	Known RBP	5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM9B	Q9NQ34	198 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	TUBG2	Q9NRH3	451 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	TAAR3P	Q9P1P4	343 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	LRFN1	Q9P244	771 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	POLDIP2	Q9Y2S7	368 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920		U3KQA8	63 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	SEC16A	O15027	2179 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	RP1	P56715	2156 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	ADAMTS20	P59510	1910 aa		5.5	□□□□□ -1.53
SNHG1-225	ENST00000545920	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	IGHV3-15	A0A0B4J1V0	119 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	FAM90A9P	A6NNJ1	464 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	PHOX2A	O14813	284 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	CXCL13	O43927	109 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	MRPL33	O75394	65 aa	Known RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	CST7	O76096	145 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	YIF1A	O95070	293 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	SYNGR4	O95473	234 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM50A	O95807	157 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	SELE	P16581	610 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	KLK2	P20151	261 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	BCL3	P20749	454 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	HAAO	P46952	286 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	PDLIM4	P50479	330 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	ERVFRD-1	P60508	538 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	RPS18	P62269	152 aa	Known RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	RAB11A	P62491	216 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	ZNF154	Q13106	437 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	SSPN	Q14714	243 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	HERPUD1	Q15011	391 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	DAZAP2	Q15038	168 aa	Predicted RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	JOSD1	Q15040	202 aa	Predicted RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	IGFBP7	Q16270	282 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM95	Q3KNT9	176 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	NCR3LG1	Q68D85	454 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	KCNIP4	Q6PIL6	250 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TRAT1	Q6PIZ9	186 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	FIP1L1	Q6UN15	594 aa	Known RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM14EP	Q6UXP3	125 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	CALHM1	Q8IU99	346 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	ODF3L1	Q8IXM7	274 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	FAM58A	Q8N1B3	248 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	OR56B2P	Q8NGI1	322 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	OR10D4P	Q8NGN7	298 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	PPP1R35	Q8TAP8	253 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	MRPL30	Q8TCC3	161 aa	Known RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	NEK7	Q8TDX7	302 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	OR5P3	Q8WZ94	311 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TAF15	Q92804	592 aa	Known RBP eCLIP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	GPR146	Q96CH1	333 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	GMPPA	Q96IJ6	420 aa	Predicted RBP	5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM204	Q9BSN7	226 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM147	Q9BVK8	224 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	CCL28	Q9NRJ3	127 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	KCNIP2	Q9NS61	270 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	RPRM	Q9NS64	109 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	SLC39A9	Q9NUM3	307 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	PSENEN	Q9NZ42	101 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	KCNIP1	Q9NZI2	227 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	ABI3	Q9P2A4	366 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	GNG13	Q9P2W3	67 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	WIPI2	Q9Y4P8	454 aa		5.49	□□□□□ -1.53
SNHG1-225	ENST00000545920	TDRD6	O60522	2096 aa	Known RBP	5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	IGKV1D-13	A0A0B4J2D9	117 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	MAP1LC3B2	A6NCE7	125 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	ARGFX	A6NJG6	315 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	LRRC3C	A6NJW4	275 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	TMEM210	A6NLX4	147 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	IFITM10	A6NMD0	228 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	ZNF727	A8MUV8	499 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	C17orf112	F2Z3M2	114 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920		F6UZH7	168 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920		H7BYZ3	331 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	HMGB3	O15347	200 aa	Known RBP	5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	PDE6D	O43924	150 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	GGCT	O75223	188 aa	Known RBP	5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	MPDU1	O75352	247 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	HRAS	P01112	189 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	TRGC2	P03986	189 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	PFN1	P07737	140 aa	Known RBP	5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	CXCL1	P09341	107 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	SCT	P09683	121 aa		5.48	□□□□□ -1.53
SNHG1-225	ENST00000545920	TRGC1	P0CF51	173 aa		5.48	□□□□□ -1.53

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms