RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SEBOXQ9HB31 216 aaPredicted RBP3.55□□□□□ -1.84
LIMS1-214ENST00000542845 CMTM6Q9NX76 183 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 PPP1R14DQ9NXH3 145 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 PEMTQ9UBM1 199 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF580Q9UK33 172 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 RNF150Q9ULK6 438 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 NUBP2Q9Y5Y2 271 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 HSPG2P98160 4391 aa3.55□□□□□ -1.84
LIMS1-214ENST00000542845 DNAH17Q9UFH2 4485 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 IGLV2-18A0A075B6J9 118 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 A0A1B0GTI1 187 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 MSGN1A6NI15 193 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 KRTAP9-7A8MTY7 169 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 H0YJX3 145 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 FCN1O00602 326 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 E2F6O75461 281 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 RPP14O95059 124 aaKnown RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 IGLV3-1P01715 115 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 TRBV12-3P01733 135 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 NPSP0C0P6 89 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 EGR2P11161 476 aaPredicted RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 RPL35AP18077 110 aaKnown RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 ALOX5APP20292 161 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 EDN2P20800 178 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 MAGEA2P43356 314 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 MFAP2P55001 183 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 APOC4P55056 127 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 MAGOHP61326 146 aaKnown RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 CX3CL1P78423 397 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 NDPQ00604 133 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 PPP1R8Q12972 351 aaKnown RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF124Q15973 351 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 C5orf64Q2M2E5 130 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 DEFB114Q30KQ6 69 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 PLAC9Q5JTB6 97 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 METTL21CQ5VZV1 264 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 GLYATQ6IB77 296 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 PYHIN1Q6K0P9 492 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 Q6P435 159 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 TMEM88Q6PEY1 159 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 SLC16A12Q6ZSM3 486 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 LAX1Q8IWV1 398 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 IQCF1Q8N6M8 205 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 OR2T33Q8NG76 320 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 OR10V1Q8NGI7 309 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 OR5D18Q8NGL1 313 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 OR2K2Q8NGT1 345 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 PLPPR1Q8TBJ4 325 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 ARL11Q969Q4 196 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 APOL4Q9BPW4 351 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 ABHD14AQ9BUJ0 271 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 MFFQ9GZY8 342 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 SLA2Q9H6Q3 261 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 IL20Q9NYY1 176 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 PEF1Q9UBV8 284 aaKnown RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 UBQLN2Q9UHD9 624 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 NUFIP1Q9UHK0 495 aaKnown RBP3.54□□□□□ -1.84
LIMS1-214ENST00000542845 OR52A1Q9UKL2 312 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 ING4Q9UNL4 249 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 DHDHQ9UQ10 334 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 GAB2Q9UQC2 676 aa3.54□□□□□ -1.84
LIMS1-214ENST00000542845 IGKV1-12A0A0C4DH73 117 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 A0A0G2JLM5 398 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 A0A0G2JND7 137 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 GAGE10A6NGK3 116 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 NPIPB5A8MRT5 1133 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 PRR32B1ATL7 298 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 EPM2AB3EWF7 344 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 NPIPB11E5RHQ5 1161 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 H3BN98 237 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 TXNL1O43396 289 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 SYT7O43581 403 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 GMNNO75496 209 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 GATBO75879 557 aaKnown RBP3.53□□□□□ -1.84
LIMS1-214ENST00000542845 SPDEFO95238 335 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 NPPAP01160 153 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 IGKV1D-12P01611 117 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 CSN2P05814 226 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 RBMY1CP0DJD4 496 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 FCGR2BP31994 310 aaPredicted RBP3.53□□□□□ -1.84
LIMS1-214ENST00000542845 TCTAP57738 103 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 EFNB1P98172 346 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 PDZK1IP1Q13113 114 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 IL13RA2Q14627 380 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 AKIRIN2Q53H80 203 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF660Q6AZW8 331 aaPredicted RBP3.53□□□□□ -1.84
LIMS1-214ENST00000542845 SLC25A48Q6ZT89 311 aaKnown RBP3.53□□□□□ -1.84
LIMS1-214ENST00000542845 RASSF6Q6ZTQ3 369 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 Q6ZWC4 215 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 ZNF679Q8IYX0 411 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 ELMOD2Q8IZ81 293 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 TCTEX1D1Q8N7M0 179 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 CHST4Q8NCG5 386 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 BBS1Q8NFJ9 593 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 OR10A7Q8NGE5 316 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 OR51T1Q8NGJ9 327 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 GRPEL2Q8TAA5 225 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 TSEN15Q8WW01 171 aaKnown RBP3.53□□□□□ -1.84
LIMS1-214ENST00000542845 DYDC1Q8WWB3 177 aa3.53□□□□□ -1.84
LIMS1-214ENST00000542845 GLMPQ8WWB7 406 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms