RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CMTM2Q8TAZ6 248 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 HSPB9Q9BQS6 159 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 OR51I2Q9H344 312 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 RBKSQ9H477 322 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 NAA60Q9H7X0 242 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 GLRX2Q9NS18 164 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 AURKAIP1Q9NWT8 199 aaPredicted RBP11.98□□□□□ -0.49
LIG1-203ENST00000536218 OR6C3Q9NZP0 311 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 TRAPPC1Q9Y5R8 145 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 MED13Q9UHV7 2174 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 PINLYPA6NC86 204 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 LRRC3CA6NJW4 275 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 GALR2O43603 387 aaPredicted RBP11.98□□□□□ -0.49
LIG1-203ENST00000536218 OPRM1P35372 400 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 PRSS12P56730 875 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 SRYQ05066 204 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 ZNF154Q13106 437 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 LINC00696Q6ZRV3 163 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 MYPOPQ86VE0 399 aaPredicted RBP11.98□□□□□ -0.49
LIG1-203ENST00000536218 HES7Q9BYE0 225 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 ULBP2Q9BZM5 246 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 ANAPC10Q9UM13 185 aa11.98□□□□□ -0.49
LIG1-203ENST00000536218 E9PLN8 166 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 LILRA1O75019 489 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 PITX3O75364 302 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 HRASP01112 189 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 PATE4P0C8F1 98 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 FKBP2P26885 142 aaKnown RBP11.97□□□□□ -0.49
LIG1-203ENST00000536218 TESK1Q15569 626 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 OR8G2PQ6IF36 304 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 Q6ZWC4 215 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 TMEM252Q8N6L7 170 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 OR11L1Q8NGX0 322 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 PGAM5Q96HS1 289 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 NAT8Q9UHE5 227 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 LOC105371242A0A075B767 164 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 IGHV3-9P01782 118 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 NKX2-1P43699 371 aaPredicted RBP11.97□□□□□ -0.49
LIG1-203ENST00000536218 HINT1P49773 126 aaPredicted RBP11.97□□□□□ -0.49
LIG1-203ENST00000536218 RRADP55042 308 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 TMEM164Q5U3C3 297 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 Q6ZN92 141 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 C6orf201Q7Z4U5 140 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 LIN37Q96GY3 246 aaPredicted RBP11.97□□□□□ -0.49
LIG1-203ENST00000536218 PYGO2Q9BRQ0 406 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 CISD1Q9NZ45 108 aaKnown RBP11.97□□□□□ -0.49
LIG1-203ENST00000536218 RBM7Q9Y580 266 aaKnown RBP11.97□□□□□ -0.49
LIG1-203ENST00000536218 ZNF407Q9C0G0 2248 aa11.97□□□□□ -0.49
LIG1-203ENST00000536218 A0A0U1RQK1 487 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 NKX2-6A6NCS4 301 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 K7EP13 123 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 DHHO43323 396 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 MSR1P21757 451 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 CHRNA7P36544 502 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 HIST3H3Q16695 136 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 MCEMP1Q8IX19 187 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 ZIC4Q8N9L1 334 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 SVIPQ8NHG7 77 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 ORAOV1Q8WV07 137 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 ZNF845Q96IR2 970 aaPredicted RBP11.96□□□□□ -0.49
LIG1-203ENST00000536218 PLEKHF2Q9H8W4 249 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 MANBALQ9NQG1 85 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 PLEK2Q9NYT0 353 aa11.96□□□□□ -0.49
LIG1-203ENST00000536218 H3BP45 60 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 CIDEAO60543 219 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 SERPINA7P05543 415 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 NTF4P34130 210 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 TPTE2P1Q5T6R2 138 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 C1orf185Q5T7R7 199 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 LIAT1Q6ZQX7 453 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 OR10G4Q8NGN3 311 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 MRGPRDQ8TDS7 321 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 PSMF1Q92530 271 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 APH1AQ96BI3 265 aa11.96□□□□□ -0.5
LIG1-203ENST00000536218 PNRC2Q9NPJ4 139 aaKnown RBP11.96□□□□□ -0.5
LIG1-203ENST00000536218 PROB1E7EW31 1015 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 MT-CO3P00414 261 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 ZNF883P0CG24 379 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 C16orf54Q6UWD8 224 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 TMPRSS7Q7RTY8 843 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 GCNT2Q8N0V5 402 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 BTF3L4Q96K17 158 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 RSG1Q9BU20 258 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 LIME1Q9H400 295 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 RPRMQ9NS64 109 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 TMEM238C9JI98 176 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 SRD5A2P31213 254 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 HNRNPA3P51991 378 aaKnown RBP11.95□□□□□ -0.5
LIG1-203ENST00000536218 CXorf66Q5JRM2 361 aaPredicted RBP11.95□□□□□ -0.5
LIG1-203ENST00000536218 LDLRAD2Q5SZI1 272 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 FAM78BQ5VT40 261 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 DYRK2Q92630 601 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 MOB3AQ96BX8 217 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 FAM103A1Q9BTL3 118 aaKnown RBP11.95□□□□□ -0.5
LIG1-203ENST00000536218 PECRQ9BY49 303 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 VSIRQ9H7M9 311 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 MCTS1Q9ULC4 181 aaKnown RBP11.95□□□□□ -0.5
LIG1-203ENST00000536218 MSTNO14793 375 aa11.95□□□□□ -0.5
LIG1-203ENST00000536218 HMGB3O15347 200 aaKnown RBP11.95□□□□□ -0.5
LIG1-203ENST00000536218 VAMP5O95183 116 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms