RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ANKRD66	B4E2M5	251 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	DCTN6	O00399	190 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	PIR	O00625	290 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	HSD17B6	O14756	317 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	TAX1BP3	O14907	124 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	DHRS3	O75911	302 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	LSM8	O95777	96 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF705D	P0CH99	300 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF705B	P0CI00	300 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	PTHLH	P12272	177 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	DRD3	P35462	400 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ZFP36L2	P47974	494 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	DLX6	P56179	175 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	TAS2R46	P59540	309 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	C1QTNF8	P60827	252 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	RPL27	P61353	136 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	GRB2	P62993	217 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	PITX1	P78337	314 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	SMAGP	Q0VAQ4	97 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	EXOSC7	Q15024	291 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	OR1Q1	Q15612	314 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	CDO1	Q16878	200 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	MS4A18	Q3C1V0	323 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ACSF3	Q4G176	576 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ACTL10	Q5JWF8	245 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	UBE2NL	Q5JXB2	153 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	LY6G6F	Q5SQ64	297 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	SBSN	Q6UWP8	590 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	C19orf35	Q6ZS72	473 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	BHLHA9	Q7RTU4	235 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	CEACAM19	Q7Z692	300 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	TSEN54	Q7Z6J9	526 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	LINC00471	Q8N535	108 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	SUMF2	Q8NBJ7	301 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF485	Q8NCK3	441 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	LRRC15	Q8TF66	581 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	SECTM1	Q8WVN6	248 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	C8orf44	Q96CB5	159 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	CXorf40B	Q96DE9	158 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	MMAB	Q96EY8	250 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF75A	Q96N20	296 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	PMCHL2	Q9BQD1	86 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	NIPSNAP3B	Q9BS92	247 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	DERL1	Q9BUN8	251 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	C1QTNF5	Q9BXJ0	243 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	RSPO3	Q9BXY4	272 aa	Predicted RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	DUSP16	Q9BY84	665 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	WDR61	Q9GZS3	305 aa	Known RBP	4.7	□□□□□ -1.66
CD44-231	ENST00000531110	RPRM	Q9NS64	109 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	FLRT3	Q9NZU0	649 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	SS18L2	Q9UHA2	77 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	KCNS2	Q9ULS6	477 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	SBF1	O95248	1867 aa		4.7	□□□□□ -1.66
CD44-231	ENST00000531110	CACNA1S	Q13698	1873 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	SAA2-SAA4	A0A096LPE2	208 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	KBTBD11-OT1	A0A1B0GTJ5	212 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110		A0A1W2PRE2	83 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ASPDH	A6ND91	283 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	FRG2C	A6NGY1	282 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	TMEM212	A6NML5	194 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110		K7EP34	96 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	IFNL4	K9M1U5	179 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	HMGB3	O15347	200 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF354A	O60765	605 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	HYPM	O75409	117 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	CNMD	O75829	334 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	VENTX	O95231	258 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	CLDN14	O95500	239 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	CA3	P07451	260 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	LINC00032	P0C843	101 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	DANCR	P0C864	163 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	LINC00869	P0C866	280 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	PGA4	P0DJD7	388 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	PGA5	P0DJD9	388 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	PPIB	P23284	216 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	FCGR2B	P31994	310 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ADRA1A	P35348	466 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF93	P35789	620 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	OR1D4	P47884	311 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	GZMM	P51124	257 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	CNN1	P51911	297 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	PAX9	P55771	341 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	RPL36A	P83881	106 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF92	Q03936	586 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	MFGE8	Q08431	387 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	FOXF1	Q12946	379 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	PPP1R8	Q12972	351 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	PSG7	Q13046	419 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	IL11RA	Q14626	422 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	AADACL3	Q5VUY0	350 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	LYPLAL1	Q5VWZ2	237 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	C12orf73	Q69YU5	71 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	STUM	Q69YW2	141 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	TRNP1	Q6NT89	227 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	DPPA3	Q6W0C5	159 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110		Q6ZN92	141 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF534	Q76KX8	674 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	SLC35F2	Q8IXU6	374 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	RFLNB	Q8N5W9	214 aa		4.69	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms