RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SELLP14151 372 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 CLN3Q13286 438 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 LINC00696Q6ZRV3 163 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 PRR18Q8N4B5 295 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 GUCD1Q96NT3 240 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 DDA1Q9BW61 102 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 GNG13Q9P2W3 67 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 CXorf65A6NEN9 183 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 IAPPP10997 89 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 PDZD11Q5EBL8 140 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 OR10G4Q8NGN3 311 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 GPR61Q9BZJ8 451 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 STRADBQ9C0K7 418 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 C12orf49Q9H741 205 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 PPP1R3CQ9UQK1 317 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 ZDBF2Q9HCK1 2354 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 TGIF2-C20orf24A0A0A6YYL0 155 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 MT-CO3P00414 261 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 METTL15P1P0C7V9 234 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 PLGLB1Q02325 96 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 ZNF726P1Q15940 193 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 ZNF585BQ52M93 769 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 WDR86Q86TI4 376 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 HAPLN4Q86UW8 402 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 ZNF525Q8N782 197 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 A0A1W2PNU3 283 aaPredicted RBP16.3■□□□□ 0.2
VPS28-213ENST00000530983 LRP5LA4QPB2 252 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 GLIPR1P48060 266 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 DCAF10Q5QP82 559 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 FAM90A2PQ658T7 463 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 ZNF497Q6ZNH5 498 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 MCEMP1Q8IX19 187 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 HIST3H2BBQ8N257 126 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 OR1K1Q8NGR3 316 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 UBALD1Q8TB05 177 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 S100PBPQ96BU1 408 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 GP6Q9HCN6 339 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 SIRT7Q9NRC8 400 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 PSENENQ9NZ42 101 aa16.3■□□□□ 0.2
VPS28-213ENST00000530983 CHD3Q12873 2000 aaKnown RBP16.29■□□□□ 0.2
VPS28-213ENST00000530983 SIRPB1O00241 398 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 ZNF883P0CG24 379 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 GAMTQ14353 236 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 UNQ6494/PRO21346Q6UXR6 183 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 SSX7Q7RTT5 188 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 MDP1Q86V88 176 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 ZNF665Q9H7R5 613 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 ABI3Q9P2A4 366 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 ST8SIA5O15466 376 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 OR2H2O95918 312 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 MDH2P40926 338 aaKnown RBP16.29■□□□□ 0.2
VPS28-213ENST00000530983 Q3ZCU0 254 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 MOB1BQ7L9L4 216 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 SSX9Q7RTT3 188 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 SCGB1C1Q8TD33 95 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 MEGF10Q96KG7 1140 aa16.29■□□□□ 0.2
VPS28-213ENST00000530983 ZFP92A6NM28 416 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 TRGC2P03986 189 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 BCL2P10415 239 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 RAB11AP62491 216 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 ZNF787Q6DD87 383 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 VASH2Q86V25 355 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 DMRTC2Q8IXT2 367 aaPredicted RBP16.28■□□□□ 0.2
VPS28-213ENST00000530983 BCL2L2Q92843 193 aaPredicted RBP16.28■□□□□ 0.2
VPS28-213ENST00000530983 PSMG3Q9BT73 122 aaPredicted RBP16.28■□□□□ 0.2
VPS28-213ENST00000530983 CISD1Q9NZ45 108 aaKnown RBP16.28■□□□□ 0.2
VPS28-213ENST00000530983 PPP1R2P9O14990 202 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 CYB5BO43169 146 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 ZNF16P17020 682 aaPredicted RBP16.28■□□□□ 0.2
VPS28-213ENST00000530983 CD200P41217 278 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 CD81P60033 236 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 LCN15Q6UWW0 184 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 TRAPPC2LQ9UL33 140 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 KCNS2Q9ULS6 477 aa16.28■□□□□ 0.2
VPS28-213ENST00000530983 ERVK11-1P61568 191 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 KIAA2026Q5HYC2 2103 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 REC114Q7Z4M0 266 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 MYPOPQ86VE0 399 aaPredicted RBP16.27■□□□□ 0.2
VPS28-213ENST00000530983 LILRB2Q8N423 598 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 SCCPDHQ8NBX0 429 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 MBD3L1Q8WWY6 194 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 RCC1LQ96I51 464 aaKnown RBP16.27■□□□□ 0.2
VPS28-213ENST00000530983 RTL8AQ9BWD3 113 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 LIN7CQ9NUP9 197 aaKnown RBP16.27■□□□□ 0.2
VPS28-213ENST00000530983 OR14J1Q9UGF5 321 aa16.27■□□□□ 0.2
VPS28-213ENST00000530983 RBM7Q9Y580 266 aaKnown RBP16.27■□□□□ 0.2
VPS28-213ENST00000530983 WDR1O75083 606 aa16.27■□□□□ 0.19
VPS28-213ENST00000530983 MEOX1P50221 254 aa16.27■□□□□ 0.19
VPS28-213ENST00000530983 FGF8P55075 233 aaPredicted RBP16.27■□□□□ 0.19
VPS28-213ENST00000530983 LRRC75BQ2VPJ9 315 aa16.27■□□□□ 0.19
VPS28-213ENST00000530983 GPR87Q9BY21 358 aa16.27■□□□□ 0.19
VPS28-213ENST00000530983 DIDO1Q9BTC0 2240 aaKnown RBP16.26■□□□□ 0.19
VPS28-213ENST00000530983 B4DEV8 164 aa16.26■□□□□ 0.19
VPS28-213ENST00000530983 TMEM9BQ9NQ34 198 aa16.26■□□□□ 0.19
VPS28-213ENST00000530983 MBNL3Q9NUK0 354 aaKnown RBP16.26■□□□□ 0.19
VPS28-213ENST00000530983 RNF150Q9ULK6 438 aa16.26■□□□□ 0.19
VPS28-213ENST00000530983 DDTP30046 118 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 HBG1P69891 147 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 HBG2P69892 147 aa16.25■□□□□ 0.19
VPS28-213ENST00000530983 NKX6-1P78426 367 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms