RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ARHGAP32A7KAX9 2087 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 CSPG4Q6UVK1 2322 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 HIVEP2P31629 2446 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 IGKV1D-8A0A087WSZ0 117 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 A0A096LNT2 108 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 TRBV6-7A0A0A0MS04 114 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 MEIS3P1A6NDR6 274 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 B4DSR2 109 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 C12orf77C9JDV5 145 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 M0R1W7 72 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 FABP7O15540 132 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 PHF1O43189 567 aaPredicted RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 RAB3DO95716 219 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 HBZP02008 142 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 CD3DP04234 171 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 IFNA6P05013 189 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 GATA3P23771 443 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 ZBTB25P24278 435 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 ZFP36P26651 326 aaKnown RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 HLA-DMAP28067 261 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 IL2RGP31785 369 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 RFX2P48378 723 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 DEFA1P59665 94 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 DEFA3P59666 94 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 ARPC4P59998 168 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 SEC61A1P61619 476 aaKnown RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 IFITM3Q01628 133 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 CDK10Q15131 360 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 HMGN3Q15651 99 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 C17orf58Q2M2W7 97 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 Q3ZCU0 254 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 ZNF57Q68EA5 555 aaPredicted RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 OR52W1Q6IF63 320 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 HEPN1Q6WQI6 88 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 Q6ZPA2 131 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 BCL6BQ8N143 479 aaPredicted RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 ARRDC1Q8N5I2 433 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 C11orf42Q8N5U0 333 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 TPRX1Q8N7U7 411 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 OR13A1Q8NGR1 328 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 OR5H2Q8NGV7 314 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 OR10J5Q8NHC4 309 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 TERB2Q8NHR7 220 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 MRGPRDQ8TDS7 321 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 FAM216AQ8WUB2 273 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 GCDHQ92947 438 aaPredicted RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 SNAPC3Q92966 411 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 AJUBAQ96IF1 538 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 CYYR1Q96J86 154 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 ZNF714Q96N38 554 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 GHITMQ9H3K2 345 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 NARFLQ9H6Q4 476 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 UNKLQ9H9P5 680 aaKnown RBP6.07□□□□□ -1.44
CD44-228ENST00000528455 HRASLSQ9HDD0 168 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 C19orf12Q9NSK7 152 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 ING3Q9NXR8 418 aa6.07□□□□□ -1.44
CD44-228ENST00000528455 A0A1W2PQ09 198 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 DISC1C4P0D8 188 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 FAM157AC9JC47 383 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 ITGB1BP1O14713 200 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 ENSAO43768 121 aaKnown RBP6.06□□□□□ -1.44
CD44-228ENST00000528455 YPEL1O60688 119 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 RGS11O94810 467 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 PMP2P02689 132 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 FCER2P06734 321 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 ZNF735P0CB33 412 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 OR5H8P0DN80 308 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 HRH1P35367 487 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 CEACAM6P40199 344 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 DLX6P56179 175 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 LOXL3P58215 753 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 TSPAN5P62079 268 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 HLA-DRB3P79483 266 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 PAX8Q06710 450 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 ASAH1Q13510 395 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 MORN2Q502X0 79 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 IGSF11Q5DX21 431 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 RNASE10Q5GAN6 216 aaKnown RBP6.06□□□□□ -1.44
CD44-228ENST00000528455 ZNF660Q6AZW8 331 aaPredicted RBP6.06□□□□□ -1.44
CD44-228ENST00000528455 MZT2BQ6NZ67 158 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 LPCAT3Q6P1A2 487 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 FGFRL1Q8N441 504 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 KIR3DL3Q8N743 410 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 C8orf31Q8N9H6 132 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 DUSP18Q8NEJ0 188 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 RFESDQ8TAC1 157 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 YPEL2Q96QA6 119 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 PRRT1Q99946 306 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 SLC25A21Q9BQT8 299 aaPredicted RBP6.06□□□□□ -1.44
CD44-228ENST00000528455 CABLES2Q9BTV7 478 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 SLC2A8Q9NY64 477 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 CALYQ9NYX4 217 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 IDI2-AS1Q9NZ38 188 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 SCP2D1Q9UJQ7 156 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 CDC42EP3Q9UKI2 254 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 GAB2Q9UQC2 676 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 KPTNQ9Y664 436 aa6.06□□□□□ -1.44
CD44-228ENST00000528455 A0A087X0M5 115 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 TRAV39A0A0B4J263 110 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 IGHV2-70DA0A0C4DH43 119 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms