RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TRIM64CA6NLI5 447 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 NDUFA3O95167 84 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 FSTP19883 344 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 DCKP27707 260 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 GABPB1Q06547 395 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-202ENST00000527827 Q499Y3 187 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 ZFP1Q6P2D0 407 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 JAGN1Q8N5M9 183 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 RDH12Q96NR8 316 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 C9orf16Q9BUW7 83 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 TOLLIPQ9H0E2 274 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 JPT1Q9UK76 154 aa18.2■□□□□ 0.5
CPSF1-202ENST00000527827 FAM90A7PA6NKC0 464 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 FAM90A23PA8MXZ1 464 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 LINC01619G3V211 115 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 GLAP06280 429 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 FUT3P21217 361 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 OR3A3P47888 321 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 DMKNQ6E0U4 476 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-202ENST00000527827 ACSM6Q6P461 480 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 ZNF833PQ6ZTB9 187 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 MRPL30Q8TCC3 161 aaKnown RBP18.19■□□□□ 0.5
CPSF1-202ENST00000527827 CASTOR1Q8WTX7 329 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 Q96M66 194 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 SELENOIQ9C0D9 397 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 ZMAT4Q9H898 229 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 CKLFQ9UBR5 152 aa18.19■□□□□ 0.5
CPSF1-202ENST00000527827 IGHV4OR15-8A0A075B7B6 117 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 A0A087WW49 117 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 TRBV5-7A0A0A0MS05 114 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 LCE6AA0A183 80 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 YPEL1O60688 119 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 LGALS1P09382 135 aaKnown RBP18.18■□□□□ 0.5
CPSF1-202ENST00000527827 MGMTP16455 207 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 CRIP2P52943 208 aaPredicted RBP18.18■□□□□ 0.5
CPSF1-202ENST00000527827 HTD2P86397 168 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 ECSCRQ19T08 205 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 AWAT2Q6E213 333 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 ZNF554Q86TJ5 538 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 LYPD6Q86Y78 171 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 ARPC1AQ92747 370 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 PGLYRP3Q96LB9 341 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 YPEL2Q96QA6 119 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 CITED4Q96RK1 184 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 LYSTQ99698 3801 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 KCNIP1Q9NZI2 227 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 CLEC2DQ9UHP7 191 aa18.18■□□□□ 0.5
CPSF1-202ENST00000527827 EPPK1P58107 5090 aaKnown RBP18.18■□□□□ 0.5
CPSF1-202ENST00000527827 A0A1W2PN81 502 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 A0A1W2PPK0 400 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 CHRNA7P36544 502 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 YIF1BQ5BJH7 314 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 LY6G6FQ5SQ64 297 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 ZFP41Q8N8Y5 198 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 OR6Q1Q8NGQ2 317 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 CST11Q9H112 138 aa18.17■□□□□ 0.5
CPSF1-202ENST00000527827 CSMD3Q7Z407 3707 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 STARD9Q9P2P6 4700 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 SAA2-SAA4A0A096LPE2 208 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 MAS1P04201 325 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 SAA2P0DJI9 122 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-202ENST00000527827 EGR2P11161 476 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-202ENST00000527827 ZNF660Q6AZW8 331 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-202ENST00000527827 CDH26Q8IXH8 852 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 OR14A2Q96R54 314 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 GHITMQ9H3K2 345 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 PALMDQ9NP74 551 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 KIAA1456Q9P272 454 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 DIMT1Q9UNQ2 313 aaKnown RBP18.16■□□□□ 0.5
CPSF1-202ENST00000527827 FOXA2Q9Y261 457 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-202ENST00000527827 ERGIC3Q9Y282 383 aa18.16■□□□□ 0.5
CPSF1-202ENST00000527827 CRTAPO75718 401 aaPredicted RBP18.15■□□□□ 0.5
CPSF1-202ENST00000527827 OR8U9P0C7N5 309 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 CX3CL1P78423 397 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 C6orf141Q5SZD1 244 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 ZNF485Q8NCK3 441 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 TM2D3Q9BRN9 247 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 IFI27L2Q9H2X8 130 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 FBXL15Q9H469 300 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 EXOSC1Q9Y3B2 195 aaKnown RBP18.15■□□□□ 0.5
CPSF1-202ENST00000527827 NUBP2Q9Y5Y2 271 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 BIRC6Q9NR09 4857 aa18.15■□□□□ 0.5
CPSF1-202ENST00000527827 DNAH1Q9P2D7 4330 aa18.14■□□□□ 0.5
CPSF1-202ENST00000527827 FCN1O00602 326 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 PDCD6O75340 191 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 RGS11O94810 467 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 SRSF7Q16629 238 aaKnown RBP eCLIP18.14■□□□□ 0.49
CPSF1-202ENST00000527827 LRRC36Q1X8D7 754 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 FAM131AQ6UXB0 335 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 GALMQ96C23 342 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 A3GALT2U3KPV4 340 aa18.14■□□□□ 0.49
CPSF1-202ENST00000527827 RRHO14718 337 aa18.13■□□□□ 0.49
CPSF1-202ENST00000527827 MYL12AP19105 171 aa18.13■□□□□ 0.49
CPSF1-202ENST00000527827 ZFAND6Q6FIF0 208 aa18.13■□□□□ 0.49
CPSF1-202ENST00000527827 TCTEX1D1Q8N7M0 179 aa18.13■□□□□ 0.49
CPSF1-202ENST00000527827 OR2AK2Q8NG84 335 aa18.13■□□□□ 0.49
CPSF1-202ENST00000527827 IRGMA1A4Y4 181 aa18.12■□□□□ 0.49
CPSF1-202ENST00000527827 BAG2O95816 211 aa18.12■□□□□ 0.49
CPSF1-202ENST00000527827 IGHV3-11P01762 117 aa18.12■□□□□ 0.49
CPSF1-202ENST00000527827 CAPGP40121 348 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms