RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 OR2C1O95371 312 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 OR10G4Q8NGN3 311 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 GALMQ96C23 342 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 OBP2BQ9NPH6 170 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 KNTC1P50748 2209 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 A0A087WWC5 75 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 IAPPP10997 89 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 TUBG1P23258 451 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 HOXC12P31275 282 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 MEOX2P50222 304 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 RPS23P62266 143 aaKnown RBP17.9■□□□□ 0.46
VPS28-205ENST00000526204 PMP22Q01453 160 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 FGFRL1Q8N441 504 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 ZNF525Q8N782 197 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 ZNF645Q8N7E2 425 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 TRIB1Q96RU8 372 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 PARD6GQ9BYG4 376 aaPredicted RBP17.9■□□□□ 0.46
VPS28-205ENST00000526204 BCL2L14Q9BZR8 327 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 TUBG2Q9NRH3 451 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 MMP24Q9Y5R2 645 aa17.9■□□□□ 0.46
VPS28-205ENST00000526204 SERF2P84101 59 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 GUSBP1Q15486 140 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 SLC35E4Q6ICL7 350 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 ZNF429Q86V71 674 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 UBALD1Q8TB05 177 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 hCG_1809904A0A1W2PP81 198 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 A0A1W2PR64 198 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 A0A1W2PRV1 198 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 C1QTNF9BB2RNN3 333 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 H0YL77 283 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 UBE2CO00762 179 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 METTL15P1P0C7V9 234 aa17.89■□□□□ 0.45
VPS28-205ENST00000526204 TRIP6Q15654 476 aaKnown RBP17.89■□□□□ 0.45
VPS28-205ENST00000526204 ACSF3Q4G176 576 aaPredicted RBP17.89■□□□□ 0.45
VPS28-205ENST00000526204 OOEPA6NGQ2 149 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 PSPNO60542 156 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 IGKV3-15P01624 115 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 MPV17P39210 176 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 UBE2KP61086 200 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 LRRC75BQ2VPJ9 315 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 LILRB2Q8N423 598 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 CYB561D1Q8N8Q1 229 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 C1orf162Q8NEQ5 155 aaPredicted RBP17.88■□□□□ 0.45
VPS28-205ENST00000526204 RAB39BQ96DA2 213 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 NIPSNAP3BQ9BS92 247 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 CXXC4Q9H2H0 198 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 TINAGQ9UJW2 476 aa17.88■□□□□ 0.45
VPS28-205ENST00000526204 S100A8P05109 93 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 IL2RGP31785 369 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 ADAM5Q6NVV9 412 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 YPEL4Q96NS1 127 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 RSG1Q9BU20 258 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 RPRMQ9NS64 109 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 IGHV3-64DA0A0J9YX35 117 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 LOC102723971A0A1B0GUV8 181 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 PPIHO43447 177 aaKnown RBP17.87■□□□□ 0.45
VPS28-205ENST00000526204 EIF3GO75821 320 aaKnown RBP eCLIP17.87■□□□□ 0.45
VPS28-205ENST00000526204 TAGLN2P37802 199 aaKnown RBP17.87■□□□□ 0.45
VPS28-205ENST00000526204 CEBPGP53567 150 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 MSMO1Q15800 293 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 SLC35E3Q7Z769 313 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 C1QL4Q86Z23 238 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 PRR7Q8TB68 274 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 MBD3L1Q8WWY6 194 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 TVP23CQ96ET8 276 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 TOLLIPQ9H0E2 274 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 METTL1Q9UBP6 276 aaKnown RBP17.87■□□□□ 0.45
VPS28-205ENST00000526204 TTC28Q96AY4 2481 aa17.87■□□□□ 0.45
VPS28-205ENST00000526204 ESPL1Q14674 2120 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 COX5AP20674 150 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 OR3A1P47881 315 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 ARL16Q0P5N6 197 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 CNEP1R1Q8N9A8 125 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 MUCL1Q96DR8 90 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 C12orf77C9JDV5 145 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 MLNRO43193 412 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 IFNA17P01571 189 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 CEBPDP49716 269 aaPredicted RBP17.86■□□□□ 0.45
VPS28-205ENST00000526204 SPANXN5Q5MJ07 72 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 C11orf53Q8IXP5 236 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 OR1L1Q8NH94 360 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 NINJ1Q92982 152 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 PINX1Q96BK5 328 aaKnown RBP17.86■□□□□ 0.45
VPS28-205ENST00000526204 DOCK7Q96N67 2140 aa17.86■□□□□ 0.45
VPS28-205ENST00000526204 CXorf65A6NEN9 183 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 AQP7O14520 342 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 CCL11P51671 97 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 DLK1P80370 383 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 TNFRSF9Q07011 255 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 CATR1Q13166 79 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 HEPN1Q6WQI6 88 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 HAPLN4Q86UW8 402 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 WDR61Q9GZS3 305 aaKnown RBP17.85■□□□□ 0.45
VPS28-205ENST00000526204 OR2D2Q9H210 308 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 SIRT7Q9NRC8 400 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 CISD1Q9NZ45 108 aaKnown RBP17.85■□□□□ 0.45
VPS28-205ENST00000526204 GNG13Q9P2W3 67 aa17.85■□□□□ 0.45
VPS28-205ENST00000526204 KIR2DL2P43627 348 aaPredicted RBP17.84■□□□□ 0.45
VPS28-205ENST00000526204 ZNF787Q6DD87 383 aa17.84■□□□□ 0.45
VPS28-205ENST00000526204 ACP7Q6ZNF0 438 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms