RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ADIGQ0VDE8 80 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 IHHQ14623 411 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 WHAMMP3Q1A5X7 153 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 LRRC36Q1X8D7 754 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 MICAQ29983 383 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 CNPY1Q3B7I2 92 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 PAGE3Q5JUK9 113 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 LAMTOR1Q6IAA8 161 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 CNIH2Q6PI25 160 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 REG3GQ6UW15 175 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 C3orf62Q6ZUJ4 267 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 GRINAQ7Z429 371 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 PPP1R27Q86WC6 154 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 C1orf158Q8N1D5 194 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 EIF4E3Q8N5X7 224 aaKnown RBP3.59□□□□□ -1.83
CD44-220ENST00000525688 COX18Q8N8Q8 333 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 OR8J3Q8NGG0 315 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 OR9A2Q8NGT5 310 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 OR13C6PQ8NH95 151 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 CD200R1Q8TD46 325 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 BLNKQ8WV28 456 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 LRRC58Q96CX6 371 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 ZNF285Q96NJ3 590 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 BIRC8Q96P09 236 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 PITX2Q99697 317 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 KIR2DL4Q99706 377 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 C2orf88Q9BSF0 95 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 FAAP24Q9BTP7 215 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 SRXN1Q9BYN0 137 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 SLC25A39Q9BZJ4 359 aaPredicted RBP3.59□□□□□ -1.83
CD44-220ENST00000525688 LINC00597Q9H2U6 94 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 RPF2Q9H7B2 306 aaKnown RBP3.59□□□□□ -1.83
CD44-220ENST00000525688 RRAGDQ9NQL2 400 aaPredicted RBP3.59□□□□□ -1.83
CD44-220ENST00000525688 SPANXA1Q9NS26 97 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 TAS2R5Q9NYW4 299 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 DNAJC27Q9NZQ0 273 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 VAX2Q9UIW0 290 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 KCNE3Q9Y6H6 103 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 HELZP42694 1942 aaKnown RBP3.59□□□□□ -1.83
CD44-220ENST00000525688 TICRRQ7Z2Z1 1910 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 MYH10P35580 1976 aa3.59□□□□□ -1.83
CD44-220ENST00000525688 DCHS1Q96JQ0 3298 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 A0A0U1RQV1 116 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 EXOC1LA0A1B0GW35 172 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 J3QT63 122 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 MANBAO00462 879 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 EIF1BO60739 113 aaKnown RBP3.58□□□□□ -1.84
CD44-220ENST00000525688 PTHP01270 115 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 IGLV3-25P01717 112 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 IGLV3-27P01718 113 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 H2AFZP0C0S5 128 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 ESDP10768 282 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 ATF1P18846 271 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 PAX6P26367 422 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 ERP29P30040 261 aaKnown RBP3.58□□□□□ -1.84
CD44-220ENST00000525688 EIF1P41567 113 aaKnown RBP3.58□□□□□ -1.84
CD44-220ENST00000525688 KIR2DS2P43631 304 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 REG1BP48304 166 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 GZMMP51124 257 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 MTPNP58546 118 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 CDK10Q15131 360 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 RSU1Q15404 277 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 CDNFQ49AH0 187 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 C11orf71Q6IPW1 123 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 KRTAP5-3Q6L8H2 238 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 TMEM205Q6UW68 189 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 OAFQ86UD1 273 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 SLC25A42Q86VD7 318 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 CADM2Q8N3J6 435 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 NPWQ8N729 165 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 NEIL3Q8TAT5 605 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 ABHD3Q8WU67 409 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 SKA2Q8WVK7 121 aaPredicted RBP3.58□□□□□ -1.84
CD44-220ENST00000525688 MARC2Q969Z3 335 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 PYURFQ96I23 114 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 BTN2A3PQ96KV6 586 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 FAM19A4Q96LR4 140 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 RDH12Q96NR8 316 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 TBX5Q99593 518 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 SOSTQ9BQB4 213 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 EMC6Q9BV81 110 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 SELENOIQ9C0D9 397 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 IDI2-AS1Q9NZ38 188 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 ZNF581Q9P0T4 197 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 OR12D3Q9UGF7 316 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 MYO16Q9Y6X6 1858 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 RALGAPA1Q6GYQ0 2036 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 CACNA1GO43497 2377 aa3.58□□□□□ -1.84
CD44-220ENST00000525688 RIF1Q5UIP0 2472 aaKnown RBP3.58□□□□□ -1.84
CD44-220ENST00000525688 IGKV1D-13A0A0B4J2D9 117 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 RBMY1BA6NDE4 496 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 RBMY1EA6NEQ0 496 aaKnown RBP3.57□□□□□ -1.84
CD44-220ENST00000525688 OR4C46A6NHA9 309 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 BTNL10A8MVZ5 291 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 K7EP13 123 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 K7EQS6 105 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 PDE6DO43924 150 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 KBTBD11O94819 623 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 MOSP00540 346 aa3.57□□□□□ -1.84
CD44-220ENST00000525688 IL3P08700 152 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms