RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 OR2AT4A6NND4 320 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ZNF879B4DU55 563 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ANGPTL7O43827 346 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 GATBO75879 557 aaKnown RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 FSTL3O95633 263 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CST4P01036 141 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SFTPBP07988 381 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 PPIAL4GP0DN37 164 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ALOX5APP20292 161 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 PRTN3P24158 256 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 HTR1FP30939 366 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 OTX1P32242 354 aaPredicted RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 CFHR2P36980 270 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 HAAOP46952 286 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 EDDM3BP56851 147 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 BPIFB3P59826 476 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 C17orf58Q2M2W7 97 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ZNF674Q2M3X9 581 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 DEFB112Q30KQ8 113 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 C15orf32Q32M92 178 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SMIM21Q3B7S5 101 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CEACAM21Q3KPI0 293 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 HIGD2BQ4VC39 106 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 DMRTC1Q5HYR2 192 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 MUC21Q5SSG8 566 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SLC25A30Q5SVS4 291 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CLVS2Q5SYC1 327 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SLX4IPQ5VYV7 408 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 NXNL2Q5VZ03 156 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 C12orf73Q69YU5 71 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ZFP1Q6P2D0 407 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 FAHD1Q6P587 224 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 C16orf87Q6PH81 154 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 DEGS2Q6QHC5 323 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 REG3GQ6UW15 175 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 WDR82Q6UXN9 313 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 PLEKHG7Q6ZR37 379 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 VMO1Q7Z5L0 202 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ZNF573Q86YE8 665 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 BATF2Q8N1L9 274 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 FAM216BQ8N7L0 139 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ASCC1Q8N9N2 400 aaKnown RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 ZSCAN4Q8NAM6 433 aaPredicted RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 ZNF555Q8NEP9 628 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 OR5A2Q8NGI9 324 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 OR10Z1Q8NGY1 313 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 OR4F5Q8NH21 305 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 PYDC1Q8WXC3 89 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 OR5P3Q8WZ94 311 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 TOMM40LQ969M1 308 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 UPRTQ96BW1 309 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SEH1LQ96EE3 360 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 BORCS8Q96FH0 119 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CENPNQ96H22 339 aaPredicted RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 OR8B4Q96RC9 309 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CIB1Q99828 191 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 BEX1Q9HBH7 125 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SIRT7Q9NRC8 400 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ACOXLQ9NUZ1 547 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CLN6Q9NWW5 311 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 FAM206AQ9NX38 181 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 WARS2Q9UGM6 360 aaKnown RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 GLS2Q9UI32 602 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 OR52A1Q9UKL2 312 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 COPS3Q9UNS2 423 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 KLHDC2Q9Y2U9 406 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 GMPPBQ9Y5P6 360 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 SNX5Q9Y5X3 404 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 R4GMQ9 66 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 ARID1AO14497 2285 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 HEATR1Q9H583 2144 aaKnown RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 CR1P17927 2039 aa2.8□□□□□ -1.96
NUP54-212ENST00000513248 CHD3Q12873 2000 aaKnown RBP2.8□□□□□ -1.96
NUP54-212ENST00000513248 ACANP16112 2415 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 IGHV1-69DA0A0B4J2H0 117 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 A0A0U1RQV5 110 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 CENPVL3A0A0U1RRI6 287 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 A0A1B0GW55 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 A0A1B0GWJ7 208 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 A0A1W2PQL4 384 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 TMEM89A2RUT3 159 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 SMIM30A4D0T7 59 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 RFPL4AA6NLU0 287 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 RFPL4AL1F8VTS6 287 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 J3QLW9 94 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 J3QT63 122 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 EI24O14681 340 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 NPFFO15130 113 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 MAGEB3O15480 346 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 MAGEB4O15481 346 aaPredicted RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 RHBDL1O75783 438 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DHRS3O75911 302 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 IGHV1-69P01742 117 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 TFF1P04155 84 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 HTR1AP08908 422 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 FBP1P09467 338 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 UBCP0CG48 685 aaKnown RBP2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4L2P0CJ85 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4L3P0CJ86 424 aa2.79□□□□□ -1.96
NUP54-212ENST00000513248 DUX4L4P0CJ87 422 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms