RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 F11RQ9Y624 299 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 PPLO60437 1756 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 TRAV9-2A0A087WT02 112 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 H3BRM9 83 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 IGLV3-27P01718 113 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 LDLRAD2Q5SZI1 272 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 C8orf82Q6P1X6 216 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 GATAD1Q8WUU5 269 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 HARBI1Q96MB7 349 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 ZFP64Q9NPA5 681 aa9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 TBL2Q9Y4P3 447 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM202A6NGA9 273 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 H7C1H1 209 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 RAE1P78406 368 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 MAJINQ3KP22 176 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 RNFT1Q5M7Z0 435 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 TSPO2Q5TGU0 170 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 WFDC8Q8IUA0 241 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 SMIM8Q96KF7 97 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 ST20Q9HBF5 79 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 AFDNP55196 1824 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 TRAV39A0A0B4J263 110 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 SS18L1O75177 396 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 ZGLP1P0C6A0 271 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 CTLA4P16410 223 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 UCP3P55916 312 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 OR13H1Q8NG92 308 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 KCNE1BA0A087WTH5 132 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 DLL1O00548 723 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 GPX4P36969 197 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 ASCL4Q6XD76 172 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 FAM181AQ8N9Y4 354 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 OR10W1Q8NGF6 305 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 OR9G4Q8NGQ1 327 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 ORAOV1Q8WV07 137 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 ASB10Q8WXI3 467 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 HCFC1R1Q9NWW0 138 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 FCGR3AP08637 254 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 KLK2P20151 261 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 ANOS1P23352 680 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 TNFAIP6P98066 277 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 HSD52Q0P140 79 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 SMOC1Q9H4F8 434 aa9.8□□□□□ -0.84
LIMCH1-217ENST00000512946 SRD5A2P31213 254 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 CT83Q5H943 113 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 DCAF12L2Q5VW00 463 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 ZNF774Q6NX45 483 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 CD200R1LQ6Q8B3 271 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 THSD4Q6ZMP0 1018 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM170AQ8WVE7 144 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 H3BUT2 72 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 TSPAN2O60636 221 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 ERGP11308 486 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 CTSSP25774 331 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 KCNMB1Q16558 191 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 FAM78AQ5JUQ0 283 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 NR2C2APQ86WQ0 139 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 PGPA6NDG6 321 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 DEFB108AA8MXU0 73 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 K7EQS6 105 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 SPRY3O43610 288 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 SRSF4Q08170 494 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 ZNF324BQ6AW86 544 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 BIVMQ86UB2 503 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 TM4SF19Q96DZ7 209 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 C2orf88Q9BSF0 95 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 YBX2Q9Y2T7 364 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 IGLV3-16A0A075B6K0 115 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 IGHV3-20A0A0C4DH32 117 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 PGPEP1LA6NFU8 196 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 APOMO95445 188 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 NUTF2P61970 127 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 SSBP2P81877 361 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 EFNB1P98172 346 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 BHLHA15Q7RTS1 189 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 AMER3Q8N944 861 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM106BQ9NUM4 274 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 COA4Q9NYJ1 87 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 ST6GALNAC2Q9UJ37 374 aa9.79□□□□□ -0.84
LIMCH1-217ENST00000512946 CEACAM18A8MTB9 384 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 WNT9BO14905 357 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 PSG2P11465 335 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 C1orf100Q5SVJ3 147 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 EBLN2Q6P2I7 272 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 TMEM108Q6UXF1 575 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 ONECUT1Q9UBC0 465 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 RABAC1Q9UI14 185 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 ODAMA1E959 279 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 GDF9O60383 454 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 TMIGD3P0DMS9 266 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 TSPOP30536 169 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 RUNX1Q01196 453 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 GCSAMLQ5JQS6 135 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 PHLDA3Q9Y5J5 127 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 A0A0U1RQV5 110 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 WNT5AP41221 380 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 P2RY4P51582 365 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 CCL11P51671 97 aa9.78□□□□□ -0.84
LIMCH1-217ENST00000512946 GAGE13Q4V321 117 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms