RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 CNIH3Q8TBE1 160 aa8.13□□□□□ -1.11
USP53-207ENST00000510852 DEDD2Q8WXF8 326 aa8.13□□□□□ -1.11
USP53-207ENST00000510852 RND1Q92730 232 aa8.13□□□□□ -1.11
USP53-207ENST00000510852 C20orf85Q9H1P6 137 aa8.13□□□□□ -1.11
USP53-207ENST00000510852 FZR1Q9UM11 496 aa8.13□□□□□ -1.11
USP53-207ENST00000510852 MFNGO00587 321 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 LYPD3O95274 346 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 CRYGDP07320 174 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 SMIM11AP58511 58 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 PNRC1Q12796 327 aaPredicted RBP8.12□□□□□ -1.11
USP53-207ENST00000510852 FAAP20Q6NZ36 180 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 FA2HQ7L5A8 372 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 NAA40Q86UY6 237 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 TMEM86BQ8N661 226 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 OR2M3Q8NG83 312 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 ZNF563Q8TA94 476 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 APOL4Q9BPW4 351 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 HES7Q9BYE0 225 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 LINC00470Q9BZP3 86 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 DEPPQ9NTK1 212 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 IDI2-AS1Q9NZ38 188 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 RPS6KB2Q9UBS0 482 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 SLC7A7Q9UM01 511 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 TRAPPC4Q9Y296 219 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 CNTRLQ7Z7A1 2325 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 IGHV2-70DA0A0C4DH43 119 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 NTN1O95631 604 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 SP1P08047 785 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 ST3GAL4Q11206 333 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 MYBPHQ13203 477 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 FAM74A1Q5RGS3 127 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 TBPL2Q6SJ96 375 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 TPRX1Q8N7U7 411 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 CHST4Q8NCG5 386 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 OR4K17Q8NGC6 315 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 OR5M9Q8NGP3 310 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 OR1S2Q8NGQ3 325 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 S1PR3Q99500 378 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 CXXC4Q9H2H0 198 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 ACOT13Q9NPJ3 140 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 CHD8Q9HCK8 2581 aa8.12□□□□□ -1.11
USP53-207ENST00000510852 ZNF726A6NNF4 738 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 B5MCH6 92 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 SOCS2O14508 198 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 IGHV2-5P01817 119 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 PRKACGP22612 351 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 BRS3P32247 399 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 QPRTQ15274 297 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 ALG10BQ5I7T1 473 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 TOMM20LQ6UXN7 152 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 RASSF6Q6ZTQ3 369 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 OR1J4Q8NGS1 313 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 PRSS27Q9BQR3 290 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 SULT4A1Q9BR01 284 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 MED9Q9NWA0 146 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 ERG28Q9UKR5 140 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 AK6Q9Y3D8 172 aaKnown RBP8.11□□□□□ -1.11
USP53-207ENST00000510852 CSAG2Q9Y5P2 127 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 CPAMD8Q8IZJ3 1885 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 ANKRD11Q6UB99 2663 aaPredicted RBP8.11□□□□□ -1.11
USP53-207ENST00000510852 LOC102724200A0A096LPH7 203 aaPredicted RBP8.11□□□□□ -1.11
USP53-207ENST00000510852 PINLYPA6NC86 204 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 J3QRK9 145 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 ZIC3O60481 467 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 AMBPP02760 352 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 GP1BBP13224 206 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 PSMB1P20618 241 aaKnown RBP8.11□□□□□ -1.11
USP53-207ENST00000510852 APOBEC1P41238 236 aaKnown RBP8.11□□□□□ -1.11
USP53-207ENST00000510852 MEOX1P50221 254 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 CD164Q04900 197 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 GGTLC2Q14390 218 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 ZNF846Q147U1 533 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 LINC01356Q8N9X3 169 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 TMEM255BQ8WV15 326 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 ARL11Q969Q4 196 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 TP53RKQ96S44 253 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 FAM173AQ9BQD7 235 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 NKX6-2Q9C056 277 aaPredicted RBP8.11□□□□□ -1.11
USP53-207ENST00000510852 VDAC3Q9Y277 283 aa8.11□□□□□ -1.11
USP53-207ENST00000510852 BSNQ9UPA5 3926 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 A0A087WUU8 490 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 F5H5K5 113 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 ZBTB25P24278 435 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 OR8B8Q15620 311 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 ST3GAL2Q16842 350 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 ANKRD34AQ69YU3 496 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 ZNF343Q6P1L6 599 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 UGT2A3Q6UWM9 527 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 SHFQ7M4L6 423 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 H1FOOQ8IZA3 346 aaPredicted RBP8.1□□□□□ -1.11
USP53-207ENST00000510852 OR10G2Q8NGC3 310 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 SCMH1Q96GD3 660 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 LINC00477Q96M19 166 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 GPR82Q96P67 336 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 GABARAPL1Q9H0R8 117 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 TPSG1Q9NRR2 321 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 KLF13Q9Y2Y9 288 aaPredicted RBP8.1□□□□□ -1.11
USP53-207ENST00000510852 EXOSC1Q9Y3B2 195 aaKnown RBP8.1□□□□□ -1.11
USP53-207ENST00000510852 HEATR5AQ86XA9 2040 aa8.1□□□□□ -1.11
USP53-207ENST00000510852 TMEM72A0PK05 275 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms