RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 A0A1W2PRM7 423 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SMIM9A6NGZ8 99 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZNF726A6NNF4 738 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZNF878C9JN71 531 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 G3V3Q6 166 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 J3QR89 54 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TNFRSF11BO00300 401 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ERI3O43414 337 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 AIREO43918 545 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GNG7O60262 68 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SLC16A7O60669 478 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR2J3O76001 311 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CDS2O95674 445 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 AIFM1O95831 613 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HAND1O96004 215 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CFDP00746 253 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 NRASP01111 189 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OPN1SWP03999 348 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DBIP07108 87 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 HOXB7P09629 217 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR4Q2P0C623 313 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 UBBP0CG47 229 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR5H8P0DN80 308 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ALOX5APP20292 161 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PMCHP20382 165 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NFYAP23511 347 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 GABRR2P28476 465 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HTR1EP28566 365 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CRYBB2P43320 205 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DNASE1L1P49184 302 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SULT1A1P50225 295 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SULT1A2P50226 295 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ACLYP53396 1101 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CLDN12P56749 244 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PLP1P60201 277 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RAB10P61026 200 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 UBE2KP61086 200 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NTHL1P78549 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HOXC5Q00444 222 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CDK5Q00535 292 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZNF763Q0D2J5 394 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GGTLC2Q14390 218 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 EDDM3AQ14507 147 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZNF235Q14590 738 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 IAH1Q2TAA2 248 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 SPIN4Q56A73 249 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TMEM97Q5BJF2 176 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TMEM78Q5T7P6 136 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HENMT1Q5T8I9 393 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 STUMQ69YW2 141 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NIPAL3Q6P499 406 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RPL22L1Q6P5R6 122 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 WDR82Q6UXN9 313 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GOLGA7Q7Z5G4 137 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TMEM25Q86YD3 366 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C20orf196Q8IYI0 205 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DEFB107AQ8IZN7 70 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HIST3H2BBQ8N257 126 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LRRC25Q8N386 305 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 BPIFB2Q8N4F0 458 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SPICQ8N5J4 248 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TCTEX1D1Q8N7M0 179 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SLC35G3Q8N808 338 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LRRC75AQ8NAA5 344 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 INO80EQ8NBZ0 244 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZNF439Q8NDP4 499 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ST6GALNAC3Q8NDV1 305 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR4K5Q8NGD3 323 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR52L1Q8NGH7 329 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR13G1Q8NGZ3 307 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR5B3Q8NH48 314 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR51Q1Q8NH59 317 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR5K2Q8NHB8 316 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HAVCR2Q8TDQ0 301 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SPRYD4Q8WW59 207 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 FAM3CQ92520 227 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RDH5Q92781 318 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RAB8BQ92930 207 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ART4Q93070 314 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CXorf40BQ96DE9 158 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DNAJA3Q96EY1 480 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CENPNQ96H22 339 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 BTF3L4Q96K17 158 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SLC35G5Q96KT7 338 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TEX37Q96LM6 180 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GPR82Q96P67 336 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZNF649Q9BS31 505 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NUDT9Q9BW91 350 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TMEM126AQ9H061 195 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SLC25A51Q9H1U9 297 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SRMSQ9H3Y6 488 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 METTL17Q9H7H0 456 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 TAF9BQ9HBM6 251 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CLN6Q9NWW5 311 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DOK5Q9P104 306 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 P2RX2Q9UBL9 471 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 VPREB3Q9UKI3 123 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 FOXJ3Q9UPW0 622 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PSG8Q9UQ74 426 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 WDR45Q9Y484 360 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms