RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 BUB1B-PAK6H3BSN5 160 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 GABARAPH6UMI1 98 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 J3QRK9 145 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 RBBP9O75884 186 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 NFYAP23511 347 aaPredicted RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 OR3A3P47888 321 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 ACTBP60709 375 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 ACTG1P63261 375 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 MRPS10P82664 201 aaKnown RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 SCGB2A2Q13296 93 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 ZNF79Q15937 498 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 SSX2Q16385 188 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 SLC25A48Q6ZT89 311 aaKnown RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 C9orf139Q6ZV77 190 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 LYSMD2Q8IV50 215 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 LYG1Q8N1E2 194 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 SIGLECL1Q8N7X8 197 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 OR5AP2Q8NGF4 316 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 OR5H2Q8NGV7 314 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 SMIM4Q8WVI0 70 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 ZDHHC16Q969W1 377 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 ZNF48Q96MX3 618 aaPredicted RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 ABHD14AQ9BUJ0 271 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 C11orf54Q9H0W9 315 aaPredicted RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 NECAP2Q9NVZ3 263 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 MTFP1Q9UDX5 166 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 RNF150Q9ULK6 438 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 ANAPC10Q9UM13 185 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 TBL2Q9Y4P3 447 aaKnown RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 AMMECR1Q9Y4X0 333 aaPredicted RBP9.65□□□□□ -0.86
CUX1-210ENST00000497815 KIAA2026Q5HYC2 2103 aa9.65□□□□□ -0.86
CUX1-210ENST00000497815 LEUTXA8MZ59 168 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 CTDSPLO15194 276 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 FBP1P09467 338 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 CTXN2P0C2S0 81 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 NAT1P18440 290 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 HRH1P35367 487 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 ETV6P41212 452 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 REG1BP48304 166 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 RFX2P48378 723 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 CDK10Q15131 360 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 TPTE2P1Q5T6R2 138 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 DYNAPQ8N1N2 210 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 C8orf31Q8N9H6 132 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 TOMM40LQ969M1 308 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 AJUBAQ96IF1 538 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 ABHD14BQ96IU4 210 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 TNFRSF19Q9NS68 423 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 EHFQ9NZC4 300 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 DPM3Q9P2X0 92 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 RBM7Q9Y580 266 aaKnown RBP9.64□□□□□ -0.87
CUX1-210ENST00000497815 HIVEP2P31629 2446 aa9.64□□□□□ -0.87
CUX1-210ENST00000497815 TLN2Q9Y4G6 2542 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 WNK2Q9Y3S1 2297 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 ZNF736B4DX44 427 aaPredicted RBP9.63□□□□□ -0.87
CUX1-210ENST00000497815 M0QYG6 137 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 GSTZ1O43708 216 aaPredicted RBP9.63□□□□□ -0.87
CUX1-210ENST00000497815 LANCL1O43813 399 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 DIRAS3O95661 229 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 OR8U9P0C7N5 309 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 OR5H8P0DN80 308 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 PTBP1P26599 531 aaKnown RBP eCLIP9.63□□□□□ -0.874e-11■■■■■ 43.6
CUX1-210ENST00000497815 IL3RAP26951 378 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 FCGR2CP31995 323 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 CEACAM3P40198 252 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 TAS2R46P59540 309 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 DIAPH2-AS1Q14236 149 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 Q3ZCU0 254 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 MINOS1Q5TGZ0 78 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 RBMS3Q6XE24 437 aaKnown RBP9.63□□□□□ -0.87
CUX1-210ENST00000497815 H1FOOQ8IZA3 346 aaPredicted RBP9.63□□□□□ -0.87
CUX1-210ENST00000497815 Q8N402 240 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 LINC00311Q8N616 119 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 OR8U1Q8NH10 309 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 EDARADDQ8WWZ3 215 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 RPEQ96AT9 228 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 CREB3L1Q96BA8 519 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 MALSU1Q96EH3 234 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 THAP7Q9BT49 309 aaPredicted RBP9.63□□□□□ -0.87
CUX1-210ENST00000497815 IFI27L2Q9H2X8 130 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 MINOS1-NBL1R4GNA1 71 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 SVEP1Q4LDE5 3571 aa9.63□□□□□ -0.87
CUX1-210ENST00000497815 LY6LH3BQJ8 138 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 HSD17B6O14756 317 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 CD3DP04234 171 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 AADACP22760 399 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 RAB7AP51149 207 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 RNASE10Q5GAN6 216 aaKnown RBP9.62□□□□□ -0.87
CUX1-210ENST00000497815 LY6G6FQ5SQ64 297 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 MFSD4AQ8N468 514 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 TMEM229BQ8NBD8 167 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 ZNF418Q8TF45 676 aaPredicted RBP9.62□□□□□ -0.87
CUX1-210ENST00000497815 DUX5Q96PT3 197 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 TINAGL1Q9GZM7 467 aaPredicted RBP9.62□□□□□ -0.87
CUX1-210ENST00000497815 SRRQ9GZT4 340 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 OR2D2Q9H210 308 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 AKIP1Q9NQ31 210 aa9.62□□□□□ -0.87
CUX1-210ENST00000497815 SAA2-SAA4A0A096LPE2 208 aa9.61□□□□□ -0.87
CUX1-210ENST00000497815 HOXA3O43365 443 aaPredicted RBP9.61□□□□□ -0.87
CUX1-210ENST00000497815 IGHV4-59P01825 116 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms