RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ABHD14AQ9BUJ0 271 aa6.72□□□□□ -1.33
SF3A1-208ENST00000485618 PIPOXQ9P0Z9 390 aa6.72□□□□□ -1.33
SF3A1-208ENST00000485618 EXTL2Q9UBQ6 330 aa6.72□□□□□ -1.33
SF3A1-208ENST00000485618 SLC23A1Q9UHI7 598 aa6.72□□□□□ -1.33
SF3A1-208ENST00000485618 ZNF221Q9UK13 617 aa6.72□□□□□ -1.33
SF3A1-208ENST00000485618 KCNK7Q9Y2U2 307 aa6.72□□□□□ -1.33
SF3A1-208ENST00000485618 ANK2Q01484 3957 aa6.71□□□□□ -1.33
SF3A1-208ENST00000485618 FABP12A6NFH5 140 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 VGLL3A8MV65 326 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 BET1O15155 118 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 RBBP9O75884 186 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 MMP23AO75900 390 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 ELK1P19419 428 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 IER3P46695 156 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 GNG10P50151 68 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 DYNLT3P51808 116 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 ACTBP60709 375 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 ACTG1P63261 375 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 ACTBL2Q562R1 376 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 SPANXN2Q5MJ10 180 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 OLFML2AQ68BL7 652 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 PYHIN1Q6K0P9 492 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 HCP5Q6MZN7 132 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 SLC25A48Q6ZT89 311 aaKnown RBP6.71□□□□□ -1.34
SF3A1-208ENST00000485618 HOGA1Q86XE5 327 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 BCL6BQ8N143 479 aaPredicted RBP6.71□□□□□ -1.34
SF3A1-208ENST00000485618 LYG1Q8N1E2 194 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 OR10V1Q8NGI7 309 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 BORCS5Q969J3 196 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 TOMM40LQ969M1 308 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 SSX3Q99909 188 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 HDHD3Q9BSH5 251 aaPredicted RBP6.71□□□□□ -1.34
SF3A1-208ENST00000485618 NECAP2Q9NVZ3 263 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 ANXA10Q9UJ72 324 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 HILPDAQ9Y5L2 63 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 SVEP1Q4LDE5 3571 aa6.71□□□□□ -1.34
SF3A1-208ENST00000485618 TRBV6-7A0A0A0MS04 114 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 IGHV3-43A0A0B4J1X8 118 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 M0QZK8 103 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 HOXA3O43365 443 aaPredicted RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 IFNA6P05013 189 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 EIF4EP06730 217 aaKnown RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 SCTP09683 121 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 GSTT2P0CG29 244 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 GSTT2BP0CG30 244 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 IGHV3-43DP0DP04 118 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 S100GP29377 79 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 PPP1CCP36873 323 aaKnown RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 GPR12P47775 334 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 DLX1P56177 255 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 TAGLNQ01995 201 aaKnown RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 PRB3Q04118 309 aaPredicted RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 SSBP1Q04837 148 aaKnown RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 CBX3Q13185 183 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 SLC9A3R2Q15599 337 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 TPTE2P1Q5T6R2 138 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 FAM71F2Q6NXP2 309 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 C16orf87Q6PH81 154 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 C16orf82Q7Z2V1 217 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 TMEM17Q86X19 198 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 THNSL2Q86YJ6 484 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 TGIF2LXQ8IUE1 241 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 SNX29P2Q8IUI4 249 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 IZUMO1Q8IYV9 350 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 BEST4Q8NFU0 473 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 OR52L2PQ8NGH6 319 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 OR4P4Q8NGL7 312 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 UBALD1Q8TB05 177 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 NUDCD2Q8WVJ2 157 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 LEAP2Q969E1 77 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 DCUN1D5Q9BTE7 237 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 SLIRPQ9GZT3 109 aaKnown RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 TAS2R8Q9NYW2 309 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 ZNRD1Q9P1U0 126 aa6.7□□□□□ -1.34
SF3A1-208ENST00000485618 ZNF230Q9UIE0 474 aaPredicted RBP6.7□□□□□ -1.34
SF3A1-208ENST00000485618 DPPA5A6NC42 116 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 FAM172BPA6NC97 362 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 DNAJC9-AS1A6NH13 148 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 LY6LH3BQJ8 138 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 H3BUX3 64 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 CTDSP2O14595 271 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 HSD17B6O14756 317 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 LANCL1O43813 399 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 IGHV3-7P01780 117 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 RNASE1P07998 156 aaKnown RBP6.69□□□□□ -1.34
SF3A1-208ENST00000485618 OR5H8P0DN80 308 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 TBPP20226 339 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 PTBP1P26599 531 aaKnown RBP eCLIP6.69□□□□□ -1.34
SF3A1-208ENST00000485618 MC5RP33032 325 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 RCVRNP35243 200 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 GDNFP39905 211 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 LUMP51884 338 aaPredicted RBP6.69□□□□□ -1.34
SF3A1-208ENST00000485618 TSPAN5P62079 268 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 UBA52P62987 128 aaKnown RBP6.69□□□□□ -1.34
SF3A1-208ENST00000485618 ZNF816Q0VGE8 651 aaPredicted RBP6.69□□□□□ -1.34
SF3A1-208ENST00000485618 IL18Q14116 193 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 TUSC1Q2TAM9 212 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 CT45A1Q5HYN5 189 aa6.69□□□□□ -1.34
SF3A1-208ENST00000485618 C12orf54Q6X4T0 127 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms