RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 GPR157Q5UAW9 335 aa9.98□□□□□ -0.81
SDC1-206ENST00000482879 OVCH2Q7RTZ1 564 aa9.98□□□□□ -0.81
SDC1-206ENST00000482879 H1FOOQ8IZA3 346 aaPredicted RBP9.98□□□□□ -0.81
SDC1-206ENST00000482879 OR9G1Q8NH87 305 aa9.98□□□□□ -0.81
SDC1-206ENST00000482879 TINAGL1Q9GZM7 467 aaPredicted RBP9.98□□□□□ -0.81
SDC1-206ENST00000482879 GSX1Q9H4S2 264 aaPredicted RBP9.98□□□□□ -0.81
SDC1-206ENST00000482879 RDH8Q9NYR8 311 aa9.98□□□□□ -0.81
SDC1-206ENST00000482879 NAV3Q8IVL0 2385 aa9.98□□□□□ -0.81
SDC1-206ENST00000482879 TRAV40A0A0B4J280 105 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 LINC00854A0A1B0GVQ3 168 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 J3QR06 171 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 IFNA6P05013 189 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 ARG1P05089 322 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 IGHV4-38-2P0DP08 117 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 FCGR2CP31995 323 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 ZNF134P52741 427 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 TSPAN5P62079 268 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 KLF9Q13886 244 aaPredicted RBP9.97□□□□□ -0.81
SDC1-206ENST00000482879 MEF2DQ14814 521 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 CT45A1Q5HYN5 189 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 KLF17Q5JT82 389 aaPredicted RBP9.97□□□□□ -0.81
SDC1-206ENST00000482879 LY6G6FQ5SQ64 297 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 VAX1Q5SQQ9 334 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 FAM120AOSQ5T036 256 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 TEX29Q8N6K0 151 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 OR2AK2Q8NG84 335 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 OR11H6Q8NGC7 330 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 OR4D10Q8NGI6 311 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 CT45A3Q8NHU0 189 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 NANPQ8TBE9 248 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 EDARADDQ8WWZ3 215 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 TOLLIPQ9H0E2 274 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 PARP12Q9H0J9 701 aaKnown RBP9.97□□□□□ -0.81
SDC1-206ENST00000482879 C11orf54Q9H0W9 315 aaPredicted RBP9.97□□□□□ -0.81
SDC1-206ENST00000482879 ABCB10Q9NRK6 738 aa9.97□□□□□ -0.81
SDC1-206ENST00000482879 IGHV1-69DA0A0B4J2H0 117 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 SLC31A2O15432 143 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 UPK1BO75841 260 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 IGHV1-69P01742 117 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 AMY2AP04746 511 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 AADACP22760 399 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 FAUP35544 74 aaKnown RBP9.96□□□□□ -0.82
SDC1-206ENST00000482879 LGALS4P56470 323 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 ZNF626Q68DY1 528 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 FAAP20Q6NZ36 180 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 DHRS11Q6UWP2 260 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 SLC25A48Q6ZT89 311 aaKnown RBP9.96□□□□□ -0.82
SDC1-206ENST00000482879 Q71RC1 249 aaPredicted RBP9.96□□□□□ -0.82
SDC1-206ENST00000482879 TMEM17Q86X19 198 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 LINC00311Q8N616 119 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 C8orf31Q8N9H6 132 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 ZNF439Q8NDP4 499 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 BEND2Q8NDZ0 799 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 OR4C16Q8NGL9 310 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 OR10X1Q8NGY0 326 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 OR6F1Q8NGZ6 308 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 OR56B4Q8NH76 319 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 ZNF596Q8TC21 504 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 GIMAP1Q8WWP7 306 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 SLC6A7Q99884 636 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 ZNF2Q9BSG1 426 aaPredicted RBP9.96□□□□□ -0.82
SDC1-206ENST00000482879 ABHD14AQ9BUJ0 271 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 HRASLSQ9HDD0 168 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 ZNRD1Q9P1U0 126 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 OR2W1Q9Y3N9 320 aa9.96□□□□□ -0.82
SDC1-206ENST00000482879 RBM7Q9Y580 266 aaKnown RBP9.96□□□□□ -0.82
SDC1-206ENST00000482879 ODF3BA8MYP8 253 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 DISC1C4P0D8 188 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 ITGB1BP1O14713 200 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 NPFFO15130 113 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 ST8SIA5O15466 376 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 TUSC2O75896 110 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 IGLV1-47P01700 117 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 OR8U9P0C7N5 309 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 HNF1AP20823 631 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 SRP14P37108 136 aaKnown RBP9.95□□□□□ -0.82
SDC1-206ENST00000482879 RAB7AP51149 207 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 LUMP51884 338 aaPredicted RBP9.95□□□□□ -0.82
SDC1-206ENST00000482879 HERV-K104P61576 105 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 HLA-DRB5Q30154 266 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 RUSC1-AS1Q66K80 236 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 ZNF660Q6AZW8 331 aaPredicted RBP9.95□□□□□ -0.82
SDC1-206ENST00000482879 BRD3OSQ6XYD6 125 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 IL17RELQ6ZVW7 336 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 ARRDC1Q8N5I2 433 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 OR8U1Q8NH10 309 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 DEDD2Q8WXF8 326 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 MMP28Q9H239 520 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 MCUBQ9NWR8 336 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 TMEM160Q9NX00 188 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 NUP50Q9UKX7 468 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 RNF150Q9ULK6 438 aa9.95□□□□□ -0.82
SDC1-206ENST00000482879 MTORP42345 2549 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 BUB1B-PAK6H3BSN5 160 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 FSHBP01225 129 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 PPYP01298 95 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 ZNF735P0CB33 412 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 HTR1DP28221 377 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 FXYD4P59646 89 aa9.94□□□□□ -0.82
SDC1-206ENST00000482879 SCGB2B2Q4G0G5 96 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms