RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 FAM74A3Q4VXF1 159 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 BTNL8Q6UX41 500 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 TCTEX1D1Q8N7M0 179 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 TMEM105Q8N8V8 129 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 MARS2Q96GW9 593 aaKnown RBP12.53□□□□□ -0.4
HDAC6-220ENST00000477528 LRRK1Q38SD2 2015 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 ETV2O00321 342 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-220ENST00000477528 CRYBA1P05813 215 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 SERF2P84101 59 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 VMA21Q3ZAQ7 101 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 KHDC3LQ587J8 217 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 ZNF826PQ6ZT77 177 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 MRGPRGQ86SM5 289 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 BAGE3Q86Y29 109 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 BAGE2Q86Y30 109 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 OR52L2PQ8NGH6 319 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 MANBALQ9NQG1 85 aa12.53□□□□□ -0.4
HDAC6-220ENST00000477528 B4DEV8 164 aa12.52□□□□□ -0.4
HDAC6-220ENST00000477528 HES1Q14469 280 aa12.52□□□□□ -0.4
HDAC6-220ENST00000477528 BMPERQ8N8U9 685 aa12.52□□□□□ -0.4
HDAC6-220ENST00000477528 ZNF524Q96C55 264 aa12.52□□□□□ -0.4
HDAC6-220ENST00000477528 TMEM56Q96MV1 263 aa12.52□□□□□ -0.4
HDAC6-220ENST00000477528 GAR1Q9NY12 217 aaKnown RBP12.52□□□□□ -0.4
HDAC6-220ENST00000477528 TRAV38-1A0A0B4J264 116 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 H3BQ15 152 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 MGST3O14880 152 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 HOXD4P09016 255 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-220ENST00000477528 OR5G3P0C626 314 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 DANCRP0C864 163 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 GGNQ86UU5 652 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 H1FOOQ8IZA3 346 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-220ENST00000477528 ZNF645Q8N7E2 425 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 RNF126Q9BV68 326 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 PQLC2LA1A4F0 135 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 CLEC12BQ2HXU8 276 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 CCL17Q92583 94 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 TUBD1Q9UJT1 453 aa12.52□□□□□ -0.41
HDAC6-220ENST00000477528 GNB1P62873 340 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 Q6ZT83 130 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 EIF4E3Q8N5X7 224 aaKnown RBP12.51□□□□□ -0.41
HDAC6-220ENST00000477528 FAM210BQ96KR6 192 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 LRFN3Q9BTN0 628 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 ZNF665Q9H7R5 613 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 HNF1AP20823 631 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 NPBWR1P48145 328 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 ARSJQ5FYB0 599 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-220ENST00000477528 C1orf185Q5T7R7 199 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 ZNF66Q6ZN08 573 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 TPRX1Q8N7U7 411 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 OR1A1Q9P1Q5 309 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 NAT8Q9UHE5 227 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 CDK2AP1O14519 115 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 RAB5AP20339 215 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 RND3P61587 244 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 RHOBP62745 196 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 DLK1P80370 383 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 QRFPP83859 136 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 FABP9Q0Z7S8 132 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 NSUN5P2Q63ZY6 315 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 OR1L1Q8NH94 360 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 CMTM2Q8TAZ6 248 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 PINLYPA6NC86 204 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 NEURL1O76050 574 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 UBE2G1P62253 170 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 STUMQ69YW2 141 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 BCL2L2Q92843 193 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-220ENST00000477528 ACY3Q96HD9 319 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 SLC35D1Q9NTN3 355 aa12.51□□□□□ -0.41
HDAC6-220ENST00000477528 LILRB1Q8NHL6 650 aaPredicted RBP12.5□□□□□ -0.41
HDAC6-220ENST00000477528 LSM10Q969L4 123 aaKnown RBP12.5□□□□□ -0.41
HDAC6-220ENST00000477528 TOLLIPQ9H0E2 274 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 KCNMB2Q9Y691 235 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 SVILO95425 2214 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 IGHV3OR15-7A0A075B7D8 119 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 USB1Q9BQ65 265 aaKnown RBP12.5□□□□□ -0.41
HDAC6-220ENST00000477528 SIRT7Q9NRC8 400 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 CLN8Q9UBY8 286 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 KIAA1671Q9BY89 1806 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 ZNF320A2RRD8 509 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 FAM90A26D6RGX4 464 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 TMPRSS2O15393 492 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 COX7A2P2O60397 106 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 OPN1MWP04001 364 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 OPN1MW2P0DN77 364 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 OPN1MW3P0DN78 364 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 LDLRAD3Q86YD5 345 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 FGFRL1Q8N441 504 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 WBP1Q96G27 269 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 IGKV3D-15A0A087WSY6 115 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 CTXND1A0A1B0GTU2 59 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 CEBPDP49716 269 aaPredicted RBP12.5□□□□□ -0.41
HDAC6-220ENST00000477528 LHFPL1Q86WI0 220 aa12.5□□□□□ -0.41
HDAC6-220ENST00000477528 WISP1O95388 367 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 HPRT1P00492 218 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 BSXQ3C1V8 233 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 SH2D2AQ9NP31 389 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 SLC45A2Q9UMX9 530 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 GALR1P47211 349 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 FDCSPQ8NFU4 85 aa12.49□□□□□ -0.41
HDAC6-220ENST00000477528 ZNF71Q9NQZ8 489 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms