RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 DBX1A6NMT0 343 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 MPPED1O15442 326 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 OR2A4O95047 310 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 CLDN1O95832 211 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 IGKV1-13P0DP09 117 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 CXCL3P19876 107 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 GPR6P46095 362 aaPredicted RBP10.61□□□□□ -0.71
VPS13D-205ENST00000473099 RAB7AP51149 207 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 CYCSP99999 105 aaKnown RBP10.61□□□□□ -0.71
VPS13D-205ENST00000473099 C17orf58Q2M2W7 97 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 ZFP69Q49AA0 526 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 ZNF818PQ6ZRF7 136 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 C5orf24Q7Z6I8 188 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 ZNF645Q8N7E2 425 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 LRTM2Q8N967 370 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 OR52L2PQ8NGH6 319 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 OR5M8Q8NGP6 311 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 H1FXQ92522 213 aaKnown RBP10.61□□□□□ -0.71
VPS13D-205ENST00000473099 ZNF714Q96N38 554 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 OR2A7Q96R45 310 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 DCTN5Q9BTE1 182 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 RANBP3Q9H6Z4 567 aaPredicted RBP10.61□□□□□ -0.71
VPS13D-205ENST00000473099 CCL28Q9NRJ3 127 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 GFOD1Q9NXC2 390 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 IDI2-AS1Q9NZ38 188 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 UNC79Q9P2D8 2635 aa10.61□□□□□ -0.71
VPS13D-205ENST00000473099 BOLA2-SMG1P6H3BVE0 249 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 GOSR2O14653 212 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 HSD17B6O14756 317 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 C1QBP02746 253 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 OR8U9P0C7N5 309 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 PPP1CCP36873 323 aaKnown RBP10.6□□□□□ -0.71
VPS13D-205ENST00000473099 SLC9A3R2Q15599 337 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 MORN2Q502X0 79 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 TBC1D26Q86UD7 250 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 LGI3Q8N145 548 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 TCTEX1D1Q8N7M0 179 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 OR8U1Q8NH10 309 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 RFESDQ8TAC1 157 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 UBALD1Q8TB05 177 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 DMRTB1Q96MA1 342 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 FYTTD1Q96QD9 318 aaKnown RBP10.6□□□□□ -0.71
VPS13D-205ENST00000473099 PATZ1Q9HBE1 687 aaKnown RBP10.6□□□□□ -0.71
VPS13D-205ENST00000473099 LIN7CQ9NUP9 197 aaKnown RBP10.6□□□□□ -0.71
VPS13D-205ENST00000473099 KCNS2Q9ULS6 477 aa10.6□□□□□ -0.71
VPS13D-205ENST00000473099 LRBAP50851 2863 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 C3orf85A0A1B0GTC6 90 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 DUXBA0A1W2PPF3 345 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 A8MV72 311 aaPredicted RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 F5H0A9 414 aaPredicted RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 H0Y980 276 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 SNAPC5O75971 98 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 IFNA21P01568 189 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 RBP4P02753 201 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 EIF2B2P49770 351 aaKnown RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 PDLIM4P50479 330 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 LOXL3P58215 753 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 SRSF4Q08170 494 aaKnown RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 CD300CQ08708 224 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 CATR1Q13166 79 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 TMEM187Q14656 261 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 GNMTQ14749 295 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 AVPI1Q5T686 147 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 TMEM200BQ69YZ2 307 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 GSG1LQ6UXU4 331 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 HEPN1Q6WQI6 88 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 LIAT1Q6ZQX7 453 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 TCF23Q7RTU1 214 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 C8orf46Q8TAG6 207 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 IL22RA2Q969J5 263 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 TMEM222Q9H0R3 208 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 OR2D2Q9H210 308 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 C19orf12Q9NSK7 152 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 FAM212BQ9NTI7 297 aaPredicted RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 RPUSD1Q9UJJ7 312 aaKnown RBP10.59□□□□□ -0.71
VPS13D-205ENST00000473099 GAB2Q9UQC2 676 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 CENPEQ02224 2701 aa10.59□□□□□ -0.71
VPS13D-205ENST00000473099 hCG_1809904A0A1W2PP81 198 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 A0A1W2PPE2 198 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 A0A1W2PR64 198 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 A0A1W2PRV1 198 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 NDUFS8O00217 210 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 PHF1O43189 567 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-205ENST00000473099 PGLYRP1O75594 196 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-205ENST00000473099 LY6HO94772 140 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 OR5AC1P0C628 307 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 F2RP25116 425 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 UCP1P25874 307 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 FGL1Q08830 312 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 ANKRD55Q3KP44 614 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 WDR25Q64LD2 544 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF66Q6ZN08 573 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 ZNF841Q6ZN19 808 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 NOXA1Q86UR1 476 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 DRAM1Q8N682 238 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 HYLS1Q96M11 299 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 PDCD10Q9BUL8 212 aa10.58□□□□□ -0.72
VPS13D-205ENST00000473099 METTL8Q9H825 291 aaKnown RBP10.58□□□□□ -0.72
VPS13D-205ENST00000473099 IGHV3-43A0A0B4J1X8 118 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms