RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MECP2P51608 486 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 TMEM222Q9H0R3 208 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 OPA3Q9H6K4 179 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 LRRK2Q5S007 2527 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 IGHV1-18A0A0C4DH31 117 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 IGSF23A1L1A6 192 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 SPINT2O43291 252 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 IFNA4P05014 189 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 NPBWR1P48145 328 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 TNFAIP6P98066 277 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 INO80CQ6PI98 192 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 PUSL1Q8N0Z8 303 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 USB1Q9BQ65 265 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 AURKAIP1Q9NWT8 199 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 CLEC18AA5D8T8 446 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 RNASEK-C17orf49H0YIS7 233 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 ATP6V0CP27449 155 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 PRDX2P32119 198 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 BAXQ07812 192 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 MPV17LQ2QL34 196 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 SMIM21Q3B7S5 101 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 RPL39P5Q59GN2 51 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 C22orf34Q6ZV56 151 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 SELENOHQ8IZQ5 122 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 CLEC18CQ8NCF0 446 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 OR8G5Q8NG78 346 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 SSC4DQ8WTU2 575 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 RARRES2Q99969 163 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 PIGMQ9H3S5 423 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 HEYLQ9NQ87 328 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 PCSK5Q92824 1860 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 CST4P01036 141 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 CD55P08174 381 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 CD37P11049 281 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 HNF1AP20823 631 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 PRAMEF5Q5TYX0 476 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 ZNF474Q6S9Z5 364 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 H2BFWTQ7Z2G1 175 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 LINC01560Q8TB33 94 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 ZDHHC16Q969W1 377 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 LPAR3Q9UBY5 353 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 ENSAO43768 121 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 ZNF14P17017 642 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 EGR1P18146 543 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 NAT1P18440 290 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 NAAAQ02083 359 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 DRAM1Q8N682 238 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 TMEM252Q8N6L7 170 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 FAM216BQ8N7L0 139 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 MSI2Q96DH6 328 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 TMEM204Q9BSN7 226 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 WASF3Q9UPY6 502 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 TMED3Q9Y3Q3 217 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 IGHV3-72A0A0B4J1Y9 119 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 ZP3P21754 424 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 NEUROG1Q92886 237 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 C14orf79Q96F83 325 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 DECR2Q9NUI1 292 aa11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 MRPS18CQ9Y3D5 142 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-211ENST00000471947 LY6HO94772 140 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 CLDN14O95500 239 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 SURF2Q15527 256 aaPredicted RBP11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 Q6ZR03 302 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 Q6ZRM9 215 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 COLCA1Q6ZS62 124 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 CXXC4Q9H2H0 198 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 SMG1Q96Q15 3661 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 TMEM218A2RU14 115 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 S1PR2O95136 353 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 H2AFB1P0C5Y9 115 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 VDAC1P21796 283 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 DHRS11Q6UWP2 260 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 DHRS9Q9BPW9 319 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 CYTL1Q9NRR1 136 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 SONP18583 2426 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 RAB11AP62491 216 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 WDR31Q8NA23 367 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 TECTBQ96PL2 329 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 CLCF1Q9UBD9 225 aa11.58□□□□□ -0.56
CCDC88A-211ENST00000471947 C17orf98A8MV24 154 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 GPR137BO60478 399 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 PAX6P26367 422 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 ECI1P42126 302 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 UBE2G2P60604 165 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 PJVKQ0ZLH3 352 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 PIP4P1Q86T03 277 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 SVBPQ8N300 66 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 SPSB4Q96A44 273 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 REG4Q9BYZ8 158 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 UQCC1Q9NVA1 299 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 DBX1A6NMT0 343 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 CTXN2P0C2S0 81 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 CEACAM1P13688 526 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 SLC25A31Q9H0C2 315 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 SLC25A22Q9H936 323 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 C19orf12Q9NSK7 152 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 MMP24Q9Y5R2 645 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 S100A6P06703 90 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 MDKP21741 143 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 CFPP27918 469 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms