RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 GNMTQ14749 295 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 MMDQ15546 238 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 HMGN3Q15651 99 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 NKAPLQ5M9Q1 402 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 ZNF833PQ6ZTB9 187 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 OR5M8Q8NGP6 311 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 MYOZ3Q8TDC0 251 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 C4orf3Q8WVX3 66 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 KCTD7Q96MP8 289 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 B9D2Q9BPU9 175 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 NABP2Q9BQ15 211 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 SULT4A1Q9BR01 284 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 TM2D1Q9BX74 207 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 TMEM59Q9BXS4 323 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 ABRACLQ9P1F3 81 aa11.24□□□□□ -0.61
SNRNP40-203ENST00000463988 NAPSAO96009 420 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 HLA-DRB1P01911 266 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 SRMP19623 302 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 ACTBP60709 375 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 INSL4Q14641 139 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 SPHARQ15513 63 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 RBM48Q5RL73 367 aaKnown RBP11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 FAM71F2Q6NXP2 309 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 LCNL1Q6ZST4 164 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 OR2AK2Q8NG84 335 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 CYYR1Q96J86 154 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 DUX3Q96PT4 197 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 FAAP24Q9BTP7 215 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 MRPL20Q9BYC9 149 aaKnown RBP11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 LSM2Q9Y333 95 aaKnown RBP11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 DNAH9Q9NYC9 4486 aa11.23□□□□□ -0.61
SNRNP40-203ENST00000463988 SLC22A1O15245 554 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 BPNT1O95861 308 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 UCHL1P09936 223 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 HTR2CP28335 458 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 PPIFP30405 207 aaKnown RBP11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 RAB25P57735 213 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 QRFPP83859 136 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 CD69Q07108 199 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 FHL3Q13643 280 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 DEFB136Q30KP8 78 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 HSD17B12Q53GQ0 312 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 FAM27D1Q5T7N8 215 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 C9orf66Q5T8R8 295 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 OR10K2Q6IF99 312 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 ZNF880Q6PDB4 577 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 MOB1BQ7L9L4 216 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 C6orf201Q7Z4U5 140 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 CEACAM19Q7Z692 300 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 NPBQ8NG41 125 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 UBE2E2Q96LR5 201 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 ZNF251Q9BRH9 671 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 TMED9Q9BVK6 235 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 IFI27L2Q9H2X8 130 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 OR51J1Q9H342 316 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 GHITMQ9H3K2 345 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 RIMS4Q9H426 269 aaPredicted RBP11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 SCN3BQ9NY72 215 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 STEAP1Q9UHE8 339 aa11.22□□□□□ -0.61
SNRNP40-203ENST00000463988 SAA2-SAA4A0A096LPE2 208 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 TRBV6-6A0A0A6YYG2 114 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 TMEM14DPA8MWL7 114 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 PTGES3LE9PB15 166 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 ITGB1BP1O14713 200 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 NBR2O15453 112 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 IGLV1-40P01703 118 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 SAA2P0DJI9 122 aaPredicted RBP11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 SLC2A2P11168 524 aaPredicted RBP11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 MYF6P23409 242 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 OR3A3P47888 321 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 RUNX1Q01196 453 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 UNC119Q13432 240 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 IRF3Q14653 427 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 C5orf64Q2M2E5 130 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 C5orf24Q7Z6I8 188 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 SVOPQ8N4V2 548 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 OR6M1Q8NGM8 313 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 RBMXL1Q96E39 390 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 RITA1Q96K30 269 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 ANKRD60Q9BZ19 345 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 PIPOXQ9P0Z9 390 aa11.21□□□□□ -0.61
SNRNP40-203ENST00000463988 IGHV7-81A0A0B4J1V7 117 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 RAB29O14966 203 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 NDUFA3O95167 84 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 BLVRBP30043 206 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 KIAA0141Q14154 515 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 LIN54Q6MZP7 749 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 C11orf87Q6NUJ2 197 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 TMEM65Q6PI78 240 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 FAM89BQ8N5H3 189 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 IL1F10Q8WWZ1 152 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 NICN1Q9BSH3 213 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 PLEKHJ1Q9NW61 149 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 KIAA1456Q9P272 454 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 SLC23A1Q9UHI7 598 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 MGAT4AQ9UM21 535 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 VSIG4Q9Y279 399 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 STAB2Q8WWQ8 2551 aa11.2□□□□□ -0.62
SNRNP40-203ENST00000463988 TRAV41A0A0B4J266 112 aa11.19□□□□□ -0.62
SNRNP40-203ENST00000463988 SEC14L6B5MCN3 397 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms