RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 C16orf95Q9H693 158 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 GBF1Q92538 1859 aa1.3□□□□□ -2.2
USP40-209ENST00000452724 MYO5BQ9ULV0 1848 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 IGHV3-73A0A0B4J1V6 119 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 GOLGA8QA0A0J9YX86 632 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 HSBP1L1C9JCN9 74 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 LY6HO94772 140 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 CD200P41217 278 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 PSMB3P49720 205 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 FAM3AP98173 230 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 ZBTB6Q15916 424 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 TRMT12Q53H54 448 aaKnown RBP1.29□□□□□ -2.2
USP40-209ENST00000452724 RASL11AQ6T310 242 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 DCANP1Q8TF63 244 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 CYTH2Q99418 400 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 MED18Q9BUE0 208 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 CDCA4Q9BXL8 241 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 ALG5Q9Y673 324 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 KIAA0232Q92628 1395 aa1.29□□□□□ -2.2
USP40-209ENST00000452724 A0A0G2JQZ4 141 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 DHRS12A0PJE2 317 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 M0QX08 132 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 UGT2B11O75310 529 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 SLC25A16P16260 332 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 CD36P16671 472 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 ORM2P19652 201 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 SYCP1Q15431 976 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 RBM48Q5RL73 367 aaKnown RBP1.28□□□□□ -2.2
USP40-209ENST00000452724 LGALS9CQ6DKI2 356 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 CLEC6AQ6EIG7 209 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 SYCE1Q8N0S2 351 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 OR4X1Q8NH49 305 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 PPWD1Q96BP3 646 aaKnown RBP1.28□□□□□ -2.2
USP40-209ENST00000452724 FAM210AQ96ND0 272 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 Q9BRP9 147 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 UGT2B28Q9BY64 529 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 LINC00527Q9UJ94 153 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 PSMD13Q9UNM6 376 aa1.28□□□□□ -2.2
USP40-209ENST00000452724 MRPS16Q9Y3D3 137 aaKnown RBP1.28□□□□□ -2.2
USP40-209ENST00000452724 DNMT1P26358 1616 aaKnown RBP1.28□□□□□ -2.2
USP40-209ENST00000452724 PRRC2BQ5JSZ5 2229 aaKnown RBP1.27□□□□□ -2.21
USP40-209ENST00000452724 ATAD5Q96QE3 1844 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 MAP3K19Q56UN5 1328 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 LINC00862A6NCI5 91 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 M0QYV0 167 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 GP1BAP07359 652 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 ESDP10768 282 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 PSMD7P51665 324 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 TSPEAR-AS2P59090 65 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 ACTBP60709 375 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 ACTG1P63261 375 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 TMEM75Q8N9X5 138 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 TAMM41Q96BW9 452 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 ZNF625Q96I27 306 aaPredicted RBP1.27□□□□□ -2.21
USP40-209ENST00000452724 TMEM56Q96MV1 263 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 ZNF426Q9BUY5 554 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 MND1Q9BWT6 205 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 C11orf1Q9H5F2 150 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 TREM1Q9NP99 234 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 DNAJC12Q9UKB3 198 aa1.27□□□□□ -2.21
USP40-209ENST00000452724 PXDNLA1KZ92 1463 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 C9J4A7 227 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 H3BPC8 53 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 ALOX5APP20292 161 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 CDK2P24941 298 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 RAB8AP61006 207 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 FGF12P61328 243 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 XKRXQ6PP77 449 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 CCDC12Q8WUD4 166 aaPredicted RBP1.26□□□□□ -2.21
USP40-209ENST00000452724 ATP6V1G3Q96LB4 118 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 TRNT1Q96Q11 434 aaKnown RBP1.26□□□□□ -2.21
USP40-209ENST00000452724 TBX5Q99593 518 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 GPR22Q99680 433 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 MED10Q9BTT4 135 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 PECRQ9BY49 303 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 CHMP4BQ9H444 224 aaKnown RBP1.26□□□□□ -2.21
USP40-209ENST00000452724 NDUFB11Q9NX14 153 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 ADAMTSL1Q8N6G6 1762 aa1.26□□□□□ -2.21
USP40-209ENST00000452724 TMEM213A2RRL7 107 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 SIGLEC16A6NMB1 481 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 F5H5K5 113 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 UBFD1O14562 309 aaKnown RBP1.25□□□□□ -2.21
USP40-209ENST00000452724 LIN7AO14910 233 aaPredicted RBP1.25□□□□□ -2.21
USP40-209ENST00000452724 SYNGR1O43759 233 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 MPZL2O60487 215 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 STK16O75716 305 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 NPPAP01160 153 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 SYT1P21579 422 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 ATP6V0CP27449 155 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 OR1E2P47887 323 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 C1DQ13901 141 aaKnown RBP1.25□□□□□ -2.21
USP40-209ENST00000452724 ANGPT1Q15389 498 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 EXOC3L4Q17RC7 722 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 OR4X2Q8NGF9 303 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 OR51H1Q8NH63 302 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 DYNC2LI1Q8TCX1 351 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 RNASEH2CQ8TDP1 164 aaKnown RBP1.25□□□□□ -2.21
USP40-209ENST00000452724 TNFAIP8L1Q8WVP5 186 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 LRRC45Q96CN5 670 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 MRPS24Q96EL2 167 aaKnown RBP1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms