RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SPTAN1Q13813 2472 aaKnown RBP6.32□□□□□ -1.4
SYNE1-213ENST00000448038 NUDT19A8MXV4 375 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 M0QZ24 198 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 SLC25A4P12235 298 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 MMDQ15546 238 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 PXDC1Q5TGL8 231 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 C15orf54Q8N8G6 183 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 OR10S1Q8NGN2 331 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 WBP1Q96G27 269 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 ST6GAL2Q96JF0 529 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM106BQ9NUM4 274 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 IDI2-AS1Q9NZ38 188 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 HILPDAQ9Y5L2 63 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 CACNA1DQ01668 2161 aa6.32□□□□□ -1.4
SYNE1-213ENST00000448038 A0A087WV48 116 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 PPIAL4CA0A0B4J2A2 164 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 A0A0G2JK05 382 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 HMSDA8MTL9 139 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 H0YL77 283 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 K7ENP7 123 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 PPIAL4GP0DN37 164 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM50BP56557 158 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM33P57088 247 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 FFAR4Q5NUL3 377 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ASPHD2Q6ICH7 369 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TEX261Q6UWH6 196 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 OR10Z1Q8NGY1 313 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM231Q9H6L2 316 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 PLSCR4Q9NRQ2 329 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 OPN4Q9UHM6 478 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 U3KQ87 197 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 A0A1B0GU03 582 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 MFNGO00587 321 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 PDGFAP04085 211 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 VSIG10L2P0DP72 767 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 MUC1P15941 1255 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TAGLN2P37802 199 aaKnown RBP6.31□□□□□ -1.4
SYNE1-213ENST00000448038 PDLIM4P50479 330 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 BTN1A1Q13410 526 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 SSX2Q16385 188 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ACP7Q6ZNF0 438 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 DTX1Q86Y01 620 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 BVESQ8NE79 360 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 OR2T6Q8NHC8 308 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 STARD4Q96DR4 205 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 OR1A1Q9P1Q5 309 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF319Q9P2F9 582 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 GPR132Q9UNW8 380 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 RNFT1Q5M7Z0 435 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 FAM201AQ5SY85 155 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 CLEC9AQ6UXN8 241 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.31□□□□□ -1.4
SYNE1-213ENST00000448038 IGHG3P01860 377 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 GAPDHP04406 335 aaKnown RBP6.31□□□□□ -1.4
SYNE1-213ENST00000448038 LGALS7P47929 136 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ARF6P62330 175 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 CD300CQ08708 224 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 RXFP4Q8TDU9 374 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 NABP1Q96AH0 204 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 LYZL4Q96KX0 146 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM147Q9BVK8 224 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 KPTNQ9Y664 436 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 IGHV3-72A0A0B4J1Y9 119 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 IGHV1-18A0A0C4DH31 117 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 HPRT1P00492 218 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ARL3P36405 182 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 P2RY1P47900 373 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 DYNLT3P51808 116 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ATP6V1FQ16864 119 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 HIST2H3PS2Q5TEC6 136 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 FAM219AQ8IW50 185 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF645Q8N7E2 425 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 POM121Q96HA1 1249 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 TMUB1Q9BVT8 246 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 C19orf12Q9NSK7 152 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 COA4Q9NYJ1 87 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 OBSL1O75147 1896 aa6.31□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF318Q5VUA4 2279 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 C17orf100A8MU93 164 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 IL18BPO95998 194 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 IGFBP3P17936 291 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 RPS10P46783 165 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 UBE2G2P60604 165 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF66Q6ZN08 573 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 DBX2Q6ZNG2 339 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 OR10A7Q8NGE5 316 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 OR1L8Q8NGR8 309 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 C20orf24Q9BUV8 137 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 MS4A7Q9GZW8 240 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 PHF3Q92576 2039 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 LOC105371242A0A075B767 164 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 DUXBA0A1W2PPF3 345 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 C7orf66A4D0T2 115 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 FLI1Q01543 452 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 POC1AQ8NBT0 407 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 LEAP2Q969E1 77 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 RPUSD4Q96CM3 377 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 TPPP3Q9BW30 176 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 RALYQ9UKM9 306 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 TIMM9Q9Y5J7 89 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms