RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CCL17Q92583 94 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF285Q96NJ3 590 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 LRRC61Q9BV99 259 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 RSPO3Q9BXY4 272 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 MED11Q9P086 117 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 CTSZQ9UBR2 303 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 RSL24D1Q9UHA3 163 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 DNAJC12Q9UKB3 198 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC22A7Q9Y694 548 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 KIF24Q5T7B8 1368 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PALLDQ8WX93 1383 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 MEGF6O75095 1541 aa1.78□□□□□ -2.13
CCDC88A-208ENST00000444458 MAP3K1Q13233 1512 aa1.78□□□□□ -2.13
CCDC88A-208ENST00000444458 DENND4AQ7Z401 1863 aa1.78□□□□□ -2.13
CCDC88A-208ENST00000444458 CCNKO75909 580 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ATP5G1P05496 136 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CECR9P0C854 216 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 RHEBQ15382 184 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PRR4Q16378 134 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 SSX1Q16384 188 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM201AQ5SY85 155 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TSPO2Q5TGU0 170 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FBXL22Q6P050 247 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PDPNQ86YL7 162 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CLVS1Q8IUQ0 354 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM86BQ8N661 226 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF645Q8N7E2 425 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF676Q8N7Q3 588 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 DNAJC9Q8WXX5 260 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ROPN1LQ96C74 230 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 VPS25Q9BRG1 176 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 GNB1LQ9BYB4 327 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FGFBP2Q9BYJ0 223 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 COMMD5Q9GZQ3 224 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 UQCC1Q9NVA1 299 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ENOPH1Q9UHY7 261 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CARHSP1Q9Y2V2 147 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 WASHC3Q9Y3C0 194 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PXMP4Q9Y6I8 212 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ROCK2O75116 1388 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 SLIT1O75093 1534 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 IQGAP2Q13576 1575 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 NRKQ7Z2Y5 1582 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TET3O43151 1660 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 QSER1Q2KHR3 1735 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 NCOR2Q9Y618 2525 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 SS18L1O75177 396 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FSHBP01225 129 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 RHOBP62745 196 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 GNB1P62873 340 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PSPHP78330 225 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CRADDP78560 199 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 MEF2CQ06413 473 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 HES3Q5TGS1 186 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF774Q6NX45 483 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FBXW12Q6X9E4 464 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF771Q7L3S4 317 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 NEGR1Q7Z3B1 354 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF584Q8IVC4 421 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM190Q8WZ59 177 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 APOBEC3DQ96AK3 386 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CLDN23Q96B33 292 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM101Q96IK0 257 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 OR7D2Q96RA2 312 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ATOH8Q96SQ7 321 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 NRIP2Q9BQI9 281 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ABCG5Q9H222 651 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 IDI2-AS1Q9NZ38 188 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF223Q9UK11 482 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 FIS1Q9Y3D6 152 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PZPP20742 1482 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CAMTA1Q9Y6Y1 1673 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 GON4LQ3T8J9 2241 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 HIVEP3Q5T1R4 2406 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ANKRD11Q6UB99 2663 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 STRCP1A6NGW2 1772 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV3OR16-10A0A075B7F0 116 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV2-26A0A0B4J1V2 119 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 IGKV1-8A0A0C4DH67 115 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 EXOC1LA0A1B0GW35 172 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 C9JQL5 133 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 SLC37A4O43826 429 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CST8O60676 142 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 STK16O75716 305 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CA2P00918 260 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZDHHC11BP0C7U3 371 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 RNF224P0DH78 156 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 HSPA9P38646 679 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 NUDT2P50583 147 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF83P51522 516 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CTBP2P56545 445 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 GNG5P63218 68 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 CDK5Q00535 292 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 SURF2Q15527 256 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF404Q494X3 552 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 KDM4DQ6B0I6 523 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 PCSK4Q6UW60 755 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 NOTCH2NLQ7Z3S9 236 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 DRAM1Q8N682 238 aa1.77□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNRF2Q8NHG8 242 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms