RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 HERPUD1Q15011 391 aa7.32□□□□□ -1.24
HPS4-206ENST00000439453 C1orf194Q5T5A4 169 aa7.32□□□□□ -1.24
HPS4-206ENST00000439453 ASCL4Q6XD76 172 aa7.32□□□□□ -1.24
HPS4-206ENST00000439453 OR2Y1Q8NGV0 311 aa7.32□□□□□ -1.24
HPS4-206ENST00000439453 SCGB1C1Q8TD33 95 aa7.32□□□□□ -1.24
HPS4-206ENST00000439453 FUT9Q9Y231 359 aa7.32□□□□□ -1.24
HPS4-206ENST00000439453 PIEZO2Q9H5I5 2752 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 CACNA1BQ00975 2339 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 IGKV1-12A0A0C4DH73 117 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 H3BP45 60 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 IFNA1P01562 189 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 IGKV1D-12P01611 117 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 OTX1P32242 354 aaPredicted RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 MALLQ13021 153 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 TBR1Q16650 682 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 CLEC12BQ2HXU8 276 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 BSXQ3C1V8 233 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 SLC25A53Q5H9E4 307 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 DCAF10Q5QP82 559 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 TMEM211Q6ICI0 200 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 SHISA6Q6ZSJ9 500 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 CYP2G1PQ6ZSU1 146 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 AGMATQ9BSE5 352 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 KLRF1Q9NZS2 232 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ST3GAL6Q9Y274 331 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 GOLT1BQ9Y3E0 138 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 CHD3Q12873 2000 aaKnown RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 MED12Q93074 2177 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 TMEM210A6NLX4 147 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ZNF891A8MT65 544 aaPredicted RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 DLEU1O43261 78 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 PDCD6O75340 191 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ELLP55199 621 aaPredicted RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 CNN3Q15417 329 aaKnown RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 ACTL10Q5JWF8 245 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ZNF818PQ6ZRF7 136 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 CENPVQ7Z7K6 275 aaPredicted RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 GAPTQ8N292 157 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 OR2AE1Q8NHA4 323 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 BORCS8Q96FH0 119 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ZNF845Q96IR2 970 aaPredicted RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 TMEM208Q9BTX3 173 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ELOVL1Q9BW60 279 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 RBKSQ9H477 322 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 ZNF442Q9H7R0 627 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 FKBP11Q9NYL4 201 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 TAAR3PQ9P1P4 343 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 UCP1P25874 307 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 NEK7Q8TDX7 302 aa7.31□□□□□ -1.24
HPS4-206ENST00000439453 POLR3KQ9Y2Y1 108 aaPredicted RBP7.31□□□□□ -1.24
HPS4-206ENST00000439453 KIR2DL5BA0A0G2JN68 375 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 KIR2DL5BA0A0G2JPC4 375 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 A0A1W2PPQ1 181 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 HRASP01112 189 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 MDH2P40926 338 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 PRSS12P56730 875 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 RPL23P62829 140 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 GNB2P62879 340 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 HIST1H3AP68431 136 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 ARF1P84077 181 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 Q0VFX4 171 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 ACOT6Q3I5F7 207 aaPredicted RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 PHYHD1Q5SRE7 291 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 LHFPL2Q6ZUX7 228 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 KIR2DL5AQ8N109 375 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 GBGT1Q8N5D6 347 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 SPTSSAQ969W0 71 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 PLEK2Q9NYT0 353 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 RNF150Q9ULK6 438 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 RBM7Q9Y580 266 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 IFNL4K9M1U5 179 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 ZNF737O75373 536 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 CST2P09228 141 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 ZNF295-AS1Q8N0V1 137 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 EXTL1Q92935 676 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 WFIKKN1Q96NZ8 548 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 ATRXP46100 2492 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 MAP1LC3B2A6NCE7 125 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 LRRC3CA6NJW4 275 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 AQP7P3A6NL99 342 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 K7EM74 188 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 M0QZK8 103 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 GGCTO75223 188 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 KBTBD11O94819 623 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 RPLP1P05386 114 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 MSX1P28360 303 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 PRSS8Q16651 343 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 ACSF3Q4G176 576 aaPredicted RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 NABP1Q96AH0 204 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 RPUSD4Q96CM3 377 aaKnown RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 PSMG3Q9BT73 122 aaPredicted RBP7.3□□□□□ -1.24
HPS4-206ENST00000439453 MAP1LC3BQ9GZQ8 125 aa7.3□□□□□ -1.24
HPS4-206ENST00000439453 SPTA1P02549 2419 aa7.29□□□□□ -1.24
HPS4-206ENST00000439453 LOC102723996A0A087X1L8 192 aa7.29□□□□□ -1.24
HPS4-206ENST00000439453 CEACAM4O75871 244 aa7.29□□□□□ -1.24
HPS4-206ENST00000439453 NPSP0C0P6 89 aa7.29□□□□□ -1.24
HPS4-206ENST00000439453 RPL29P47914 159 aaKnown RBP7.29□□□□□ -1.24
HPS4-206ENST00000439453 PCP4P48539 62 aa7.29□□□□□ -1.24
HPS4-206ENST00000439453 BTNL3Q6UXE8 466 aa7.29□□□□□ -1.24
HPS4-206ENST00000439453 OR51I2Q9H344 312 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms