RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SSTR5P35346 364 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 DEFB112Q30KQ8 113 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 VAX1Q5SQQ9 334 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 BRD3OSQ6XYD6 125 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 ZNF782Q6ZMW2 699 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-208ENST00000437607 ARRDC1Q8N5I2 433 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 ZNF565Q8N9K5 539 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 WFDC12Q8WWY7 111 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 IL1F10Q8WWZ1 152 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 KIRREL1Q96J84 757 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 GINS4Q9BRT9 223 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 DCTN5Q9BTE1 182 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 TINAGL1Q9GZM7 467 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-208ENST00000437607 C11orf54Q9H0W9 315 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-208ENST00000437607 HRASLSQ9HDD0 168 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 C19orf12Q9NSK7 152 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 CALYQ9NYX4 217 aa9.93□□□□□ -0.82
PTPRF-208ENST00000437607 UBE2J1Q9Y385 318 aaPredicted RBP9.93□□□□□ -0.82
PTPRF-208ENST00000437607 MEX3AA1L020 520 aaKnown RBP9.92□□□□□ -0.82
PTPRF-208ENST00000437607 BET1O15155 118 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 HSPA12AO43301 675 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 DIRAS3O95661 229 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 HBZP02008 142 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 GSTT2P0CG29 244 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 OR5H8P0DN80 308 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 TSPAN5P62079 268 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 RELBQ01201 579 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 ZNF273Q14593 569 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 TMEM30BQ3MIR4 351 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 SCGB2B2Q4G0G5 96 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 CD276Q5ZPR3 534 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 ZNF841Q6ZN19 808 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 BTN2A1Q7KYR7 527 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 KIR3DL3Q8N743 410 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 OR56B4Q8NH76 319 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 ARL11Q969Q4 196 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 GALMQ96C23 342 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 ZNF714Q96N38 554 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 PRRT1Q99946 306 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 TAS2R3Q9NYW6 316 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 SLC23A1Q9UHI7 598 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 SCP2D1Q9UJQ7 156 aa9.92□□□□□ -0.82
PTPRF-208ENST00000437607 TET2Q6N021 2002 aaPredicted RBP9.91□□□□□ -0.82
PTPRF-208ENST00000437607 FAM240BA0A1B0GVZ2 78 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 FAM181BA6NEQ2 426 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 SDCBPO00560 298 aaPredicted RBP9.91□□□□□ -0.82
PTPRF-208ENST00000437607 PLA2G10O15496 165 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 ENSAO43768 121 aaKnown RBP9.91□□□□□ -0.82
PTPRF-208ENST00000437607 FCN3O75636 299 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 SCTP09683 121 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 GZMHP20718 246 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 RFX2P48378 723 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 KRTAP10-3P60369 221 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 HERV-K104P61576 105 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 TRIM16LQ309B1 348 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 C11orf91Q3C1V1 193 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 IGSF11Q5DX21 431 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 BTNL3Q6UXE8 466 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 TCF23Q7RTU1 214 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 OR4D10Q8NGI6 311 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 OR1L1Q8NH94 360 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 OR10J5Q8NHC4 309 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 UBALD1Q8TB05 177 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 DPAGT1Q9H3H5 408 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 C1RLQ9NZP8 487 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 GNG12Q9UBI6 72 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 RPUSD1Q9UJJ7 312 aaKnown RBP9.91□□□□□ -0.82
PTPRF-208ENST00000437607 PLXNB1O43157 2135 aa9.91□□□□□ -0.82
PTPRF-208ENST00000437607 KBTBD11-OT1A0A1B0GTJ5 212 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 C22orf46C9J442 243 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 NPIPB11E5RHQ5 1161 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 LIPFP07098 398 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 ZNF728P0DKX0 622 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 RAG2P55895 527 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 HERPUD1Q15011 391 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 RBMS2Q15434 407 aaKnown RBP9.9□□□□□ -0.82
PTPRF-208ENST00000437607 LTC4SQ16873 150 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 PRAMEF5Q5TYX0 476 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 RUSC1-AS1Q66K80 236 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 Q6YL49 198 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 OVCH2Q7RTZ1 564 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 MINDY2Q8NBR6 621 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 OR51S1Q8NGJ8 323 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 C8orf46Q8TAG6 207 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 CORO2AQ92828 525 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 CITED1Q99966 193 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 CHIAQ9BZP6 476 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 TNFRSF19Q9NS68 423 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 SLC2A8Q9NY64 477 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 COPZ2Q9P299 210 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 ONECUT1Q9UBC0 465 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 JPT1Q9UK76 154 aa9.9□□□□□ -0.82
PTPRF-208ENST00000437607 hCG_1809904A0A1W2PP81 198 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 A0A1W2PPE2 198 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 A0A1W2PR64 198 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 A0A1W2PRV1 198 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 FAM172BPA6NC97 362 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 C15orf65H3BRN8 121 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 RGS11O94810 467 aa9.89□□□□□ -0.83
PTPRF-208ENST00000437607 CCL3L1P16619 93 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms