RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ABCA11PQ4W5N1 156 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 DHRS11Q6UWP2 260 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 PNKDQ8N490 385 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 OR4C16Q8NGL9 310 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 LHX4Q969G2 390 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 TRIM63Q969Q1 353 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 UNKLQ9H9P5 680 aaKnown RBP8.28□□□□□ -1.08
CD44-207ENST00000425428 C14orf166Q9Y224 244 aaKnown RBP8.28□□□□□ -1.08
CD44-207ENST00000425428 PDZD2O15018 2839 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 MAP1AP78559 2803 aaPredicted RBP8.28□□□□□ -1.08
CD44-207ENST00000425428 IGHV2-26A0A0B4J1V2 119 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 A8MV72 311 aaPredicted RBP8.27□□□□□ -1.08
CD44-207ENST00000425428 RAB29O14966 203 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 LANCL1O43813 399 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 PPYP01298 95 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 NFYAP23511 347 aaPredicted RBP8.27□□□□□ -1.08
CD44-207ENST00000425428 SRP14P37108 136 aaKnown RBP8.27□□□□□ -1.08
CD44-207ENST00000425428 UBE2E1P51965 193 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 DLX6P56179 175 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 PAX2Q02962 417 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 KLF9Q13886 244 aaPredicted RBP8.27□□□□□ -1.08
CD44-207ENST00000425428 IDO2Q6ZQW0 420 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 TCF23Q7RTU1 214 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 C8orf31Q8N9H6 132 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 POC5Q8NA72 575 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 TERB2Q8NHR7 220 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 SECTM1Q8WVN6 248 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 TOMM40LQ969M1 308 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 SLC25A21Q9BQT8 299 aaPredicted RBP8.27□□□□□ -1.08
CD44-207ENST00000425428 TINAGL1Q9GZM7 467 aaPredicted RBP8.27□□□□□ -1.08
CD44-207ENST00000425428 SIRPDQ9H106 197 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 DPAGT1Q9H3H5 408 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 HRASLSQ9HDD0 168 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 OR1A1Q9P1Q5 309 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 FAM96BQ9Y3D0 163 aa8.27□□□□□ -1.08
CD44-207ENST00000425428 ITPR3Q14573 2671 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 IGKV1D-8A0A087WSZ0 117 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 A0A087X0M5 115 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 A0A1B0GX30 115 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 RNF212BA8MTL3 300 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 LEUTXA8MZ59 168 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 J3QR06 171 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 HTR1DP28221 377 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 CD34P28906 385 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 LOXL3P58215 753 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 CBX3Q13185 183 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 RBMS2Q15434 407 aaKnown RBP8.27□□□□□ -1.09
CD44-207ENST00000425428 CCDC144NLQ6NUI1 221 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 H1FOOQ8IZA3 346 aaPredicted RBP8.27□□□□□ -1.09
CD44-207ENST00000425428 SLC38A6Q8IZM9 456 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 LYG1Q8N1E2 194 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 CIARTQ8N365 385 aaPredicted RBP8.27□□□□□ -1.09
CD44-207ENST00000425428 CCDC71LQ8N9Z2 235 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 ZBTB34Q8NCN2 500 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 BEND2Q8NDZ0 799 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 OR51S1Q8NGJ8 323 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 OR56B4Q8NH76 319 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 UPRTQ96BW1 309 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 SDHCQ99643 169 aaPredicted RBP8.27□□□□□ -1.09
CD44-207ENST00000425428 SLC5A7Q9GZV3 580 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 MS4A7Q9GZW8 240 aaPredicted RBP8.27□□□□□ -1.09
CD44-207ENST00000425428 MMP28Q9H239 520 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 PSG11Q9UQ72 335 aa8.27□□□□□ -1.09
CD44-207ENST00000425428 TBL2Q9Y4P3 447 aaKnown RBP8.27□□□□□ -1.09
CD44-207ENST00000425428 TXNL1O43396 289 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 OR8U9P0C7N5 309 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 AADACP22760 399 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 ASAH1Q13510 395 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 HERPUD1Q15011 391 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 SURF2Q15527 256 aaPredicted RBP8.26□□□□□ -1.09
CD44-207ENST00000425428 MIDNQ504T8 468 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 MINOS1Q5TGZ0 78 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 CLEC9AQ6UXN8 241 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 Q8N7P7 452 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.26□□□□□ -1.09
CD44-207ENST00000425428 OR11H6Q8NGC7 330 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 OR8U1Q8NH10 309 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 RPEQ96AT9 228 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 DACT3Q96B18 629 aaPredicted RBP8.26□□□□□ -1.09
CD44-207ENST00000425428 ZNF486Q96H40 463 aaPredicted RBP8.26□□□□□ -1.09
CD44-207ENST00000425428 AKR1E2Q96JD6 320 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 SLC6A7Q99884 636 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 TMPRSS13Q9BYE2 586 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 TOLLIPQ9H0E2 274 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 C11orf54Q9H0W9 315 aaPredicted RBP8.26□□□□□ -1.09
CD44-207ENST00000425428 OR2D2Q9H210 308 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 SLC2A8Q9NY64 477 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 MINOS1-NBL1R4GNA1 71 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 CSMD2Q7Z408 3487 aa8.26□□□□□ -1.09
CD44-207ENST00000425428 TRAV40A0A0B4J280 105 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 PIGBOS1A0A0B4J2F0 54 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 IGKV1-6A0A0C4DH72 117 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 IGHV3-7P01780 117 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 HOXB4P17483 251 aaPredicted RBP8.25□□□□□ -1.09
CD44-207ENST00000425428 CATR1Q13166 79 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 GNMTQ14749 295 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 RGS21Q2M5E4 152 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 SLC25A48Q6ZT89 311 aaKnown RBP8.25□□□□□ -1.09
CD44-207ENST00000425428 PDZD9Q8IXQ8 264 aa8.25□□□□□ -1.09
CD44-207ENST00000425428 LINC00311Q8N616 119 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms