RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 GP6Q9HCN6 339 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 MANBALQ9NQG1 85 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 TMEM212A6NML5 194 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 NPIPB7O75200 414 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 CTAG2O75638 210 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 MRPS34P82930 218 aaKnown RBP8.48□□□□□ -1.05
USP54-205ENST00000424265 SYS1Q8N2H4 156 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 OR51A2Q8NGJ7 313 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 TMEM242Q9NWH2 141 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 FANCMQ8IYD8 2048 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 FAM157AC9JC47 383 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 PLPP3O14495 311 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 DHHO43323 396 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 CRISP2P16562 243 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 C5orf64Q2M2E5 130 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 TMEM128Q5BJH2 165 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 FFAR4Q5NUL3 377 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 TEX43Q6ZNM6 134 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 FAM3DQ96BQ1 224 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 TMEM38BQ9NVV0 291 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 HHLA2Q9UM44 414 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 SEC16AO15027 2179 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 FAHP16930 419 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 THBS3P49746 956 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 SRPXP78539 464 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 C5orf17Q8NAS9 161 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 MARCH1Q8TCQ1 289 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 RNF126Q9BV68 326 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 SCN3AQ9NY46 2000 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 UCP2P55851 309 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 TMEM249Q2WGJ8 235 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 PHYHD1Q5SRE7 291 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 FA2HQ7L5A8 372 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 ARHGEF39Q8N4T4 335 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 FAM46BQ96A09 425 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 FGGYQ96C11 551 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 MRPL13Q9BYD1 178 aaKnown RBP8.47□□□□□ -1.05
USP54-205ENST00000424265 ZMAT3Q9HA38 289 aaKnown RBP8.47□□□□□ -1.05
USP54-205ENST00000424265 ARL2-SNX15V9GYD0 113 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 GYPBP06028 91 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 HIST1H1CP16403 213 aaKnown RBP8.47□□□□□ -1.05
USP54-205ENST00000424265 PDLIM4P50479 330 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 PSG3Q16557 428 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 ZNF788Q6ZQV5 615 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 LHFPL2Q6ZUX7 228 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 FAM219AQ8IW50 185 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 PNKDQ8N490 385 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 GPR146Q96CH1 333 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 ANAPC16Q96DE5 110 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 TMEM140Q9NV12 185 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 MRPS16Q9Y3D3 137 aaKnown RBP8.47□□□□□ -1.05
USP54-205ENST00000424265 NPIPB13A6NJU9 1138 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 NPIPB4C9JG80 1138 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 ZNF878C9JN71 531 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 BGLAPP02818 100 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 GABRA6Q16445 453 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 COX19Q49B96 90 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 ABCA11PQ4W5N1 156 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 OR5H2Q8NGV7 314 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 CITED2Q99967 270 aaPredicted RBP8.47□□□□□ -1.05
USP54-205ENST00000424265 SSBP4Q9BWG4 385 aaPredicted RBP8.47□□□□□ -1.05
USP54-205ENST00000424265 MTCH1Q9NZJ7 389 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 SLC22A13Q9Y226 551 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 G3V4G9 280 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 AMTP48728 403 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 KLRB1Q12918 225 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 SLC25A53Q5H9E4 307 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 SCGB1C1Q8TD33 95 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 ZNF319Q9P2F9 582 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 KLHL13Q9P2N7 655 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 PRSS50Q9UI38 385 aa8.47□□□□□ -1.05
USP54-205ENST00000424265 LRRK1Q38SD2 2015 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 A0A1B0GW64 132 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 SFT2D2O95562 160 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 DBHP09172 617 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 LGALS7P47929 136 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 TBC1D28Q2M2D7 210 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 FAM71F2Q6NXP2 309 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 ADAD2Q8NCV1 583 aaKnown RBP8.46□□□□□ -1.05
USP54-205ENST00000424265 HARBI1Q96MB7 349 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 OR2V2Q96R30 315 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 ABHD14AQ9BUJ0 271 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 TPPP3Q9BW30 176 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 TRAPPC2LQ9UL33 140 aa8.46□□□□□ -1.05
USP54-205ENST00000424265 CHCHD2Q9Y6H1 151 aaPredicted RBP8.46□□□□□ -1.05
USP54-205ENST00000424265 RHBDL1O75783 438 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 TSPOP30536 169 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 MAGEA5P43359 124 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 MFGE8Q08431 387 aaPredicted RBP8.46□□□□□ -1.06
USP54-205ENST00000424265 DUXBA0A1W2PPF3 345 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 NTF3P20783 257 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 OPRM1P35372 400 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 P2RY1P47900 373 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 FAM78BQ5VT40 261 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 TMEM251Q8N6I4 163 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 GMPPAQ96IJ6 420 aaPredicted RBP8.46□□□□□ -1.06
USP54-205ENST00000424265 KCNS2Q9ULS6 477 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 COL4A2P08572 1712 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 HPNP05981 417 aa8.46□□□□□ -1.06
USP54-205ENST00000424265 CRYGCP07315 174 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms