RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 VAMP2P63027 116 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 ID3Q02535 119 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 ZNF146Q15072 292 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 OR8G1Q15617 311 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 DHRS7BQ6IAN0 325 aaPredicted RBP12.48□□□□□ -0.41
USP4-203ENST00000415188 OR10V1Q8NGI7 309 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 TRIB1Q96RU8 372 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 PLA2G2EQ9NZK7 142 aa12.48□□□□□ -0.41
USP4-203ENST00000415188 A0A1B0GU03 582 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.47□□□□□ -0.41
USP4-203ENST00000415188 SLC33A1O00400 549 aaPredicted RBP12.47□□□□□ -0.41
USP4-203ENST00000415188 TOR1AO14656 332 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 ADAM20O43506 726 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 RHBDL1O75783 438 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 H2AFB1P0C5Y9 115 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 SPATA46Q5T0L3 261 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 FAM122CQ6P4D5 195 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 C17orf78Q8N4C9 275 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 LFNGQ8NES3 379 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 OR8G5Q8NG78 346 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 SLC25A40Q8TBP6 338 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 LSM10Q969L4 123 aaKnown RBP12.47□□□□□ -0.41
USP4-203ENST00000415188 BSCL2Q96G97 398 aaPredicted RBP12.47□□□□□ -0.41
USP4-203ENST00000415188 OR2J1Q9GZK6 312 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 OR51B6Q9H340 312 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 NDRG3Q9UGV2 375 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 WIPI2Q9Y4P8 454 aa12.47□□□□□ -0.41
USP4-203ENST00000415188 FAM74A7A6NL05 159 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 UMAD1C9J7I0 102 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 HSPA12AO43301 675 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 NXPH2O95156 264 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 TSPAN15O95858 294 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 OR2H2O95918 312 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 IGKV3-15P01624 115 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 CELA3BP08861 270 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 TIMP3P35625 211 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 CD200P41217 278 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 CAMLGP49069 296 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 AKR1C2P52895 323 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 SRSF3P84103 164 aaKnown RBP12.46□□□□□ -0.41
USP4-203ENST00000415188 AKR1C1Q04828 323 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 PEA15Q15121 130 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 GUCA2BQ16661 112 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 FAM74A3Q4VXF1 159 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 C20orf204Q6ZNR8 217 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 WDR86Q86TI4 376 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 OR1J1Q8NGS3 322 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 HES4Q9HCC6 221 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 MBNL3Q9NUK0 354 aaKnown RBP12.46□□□□□ -0.41
USP4-203ENST00000415188 CACFD1Q9UGQ2 172 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 KPTNQ9Y664 436 aa12.46□□□□□ -0.41
USP4-203ENST00000415188 ASCL1P50553 236 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 ZNF154Q13106 437 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 C9orf106Q8NAJ2 232 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 TLNRD1Q9H1K6 362 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 CXXC4Q9H2H0 198 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 SMDT1Q9H4I9 107 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 C19orf12Q9NSK7 152 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 TAAR3PQ9P1P4 343 aa12.46□□□□□ -0.42
USP4-203ENST00000415188 A0A1B0GW64 132 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 IGSF23A1L1A6 192 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 MBD3L4A6NDZ8 208 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 MBD3L3A6NE82 208 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 MBD3L5A6NJ08 208 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 RNF212BA8MTL3 300 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 WRBO00258 174 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 SIGLEC5O15389 551 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 LYZL6O75951 148 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 HEXAP06865 529 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 SERPINE2P07093 398 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 SFTA3P0C7M3 94 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 KITLGP21583 273 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 LMO1P25800 156 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 SNCAP37840 140 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 KIR2DL2P43627 348 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 POLR2GP62487 172 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP4-203ENST00000415188 NHLH2Q02577 135 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 MZT1Q08AG7 82 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 PSG7Q13046 419 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 MSMO1Q15800 293 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 MYPOPQ86VE0 399 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 TMEM252Q8N6L7 170 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 FAM169BQ8N8A8 192 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 WDR31Q8NA23 367 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 ZBTB34Q8NCN2 500 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 MBD3L2Q8NHZ7 208 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 PLPPR1Q8TBJ4 325 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 RNASE6Q93091 150 aaKnown RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 GNPNAT1Q96EK6 184 aaPredicted RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 DOCK7Q96N67 2140 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 RAB40CQ96S21 281 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 BCL2L14Q9BZR8 327 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 TMEM231Q9H6L2 316 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 LIN7CQ9NUP9 197 aaKnown RBP12.45□□□□□ -0.42
USP4-203ENST00000415188 FAM96BQ9Y3D0 163 aa12.45□□□□□ -0.42
USP4-203ENST00000415188 ANKHD1Q8IWZ3 2542 aaKnown RBP12.44□□□□□ -0.42
USP4-203ENST00000415188 TMEM30CPA0ZSE6 113 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 BTBD17A6NE02 478 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 FAM24AA6NFZ4 105 aa12.44□□□□□ -0.42
USP4-203ENST00000415188 FAM157AC9JC47 383 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms