RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ZNF737O75373 536 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 SOD1P00441 154 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 SMIM13P0DJ93 91 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 DAPP51397 102 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF141Q15928 474 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 FAM74A3Q4VXF1 159 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 C9orf106Q8NAJ2 232 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 OR8A1Q8NGG7 326 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 OR10G8Q8NGN5 311 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 OR10AG1Q8NH19 301 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 OR51H1Q8NH63 302 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RNF2Q99496 336 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 CHST2Q9Y4C5 530 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 DOCK5Q9H7D0 1870 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 A0A1W2PPV9 198 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RBFOX3A6NFN3 312 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 CA1P00915 261 aaPredicted RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 PLA2G2AP14555 144 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 RPA2P15927 270 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 LOXL3P58215 753 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 UBE2MP61081 183 aaKnown RBP6.34□□□□□ -1.39
SCN9A-202ENST00000409435 MIEN1Q9BRT3 115 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 PRDM14Q9GZV8 571 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 PBOV1Q9GZY1 135 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 SRD5A3Q9H8P0 318 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 MED20Q9H944 212 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 MANBALQ9NQG1 85 aa6.34□□□□□ -1.39
SCN9A-202ENST00000409435 HMSDA8MTL9 139 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM262E9PQX1 116 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 DUS4LO95620 317 aaKnown RBP6.34□□□□□ -1.4
SCN9A-202ENST00000409435 NGFP01138 241 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 SOD3P08294 240 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 EVX1P49640 407 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 CAMPP49913 170 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM33P57088 247 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 PLPP7Q8NBV4 271 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 WDR34Q96EX3 536 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 PLA2G12AQ9BZM1 189 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 PARP11Q9NR21 331 aa6.34□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM129A0AVI4 362 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 CSN3P07498 182 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 ROM1Q03395 351 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 DEFB113Q30KQ7 82 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 NANOGP1Q8N7R0 232 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 SLC7A10Q9NS82 523 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 TRBV4-1A0A0J9YWV2 114 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 PQLC2LA1A4F0 135 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF716A6NP11 495 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 SIGLEC5O15389 551 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 RNF224P0DH78 156 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF26P17031 533 aaPredicted RBP6.33□□□□□ -1.4
SCN9A-202ENST00000409435 MEF2CQ06413 473 aaPredicted RBP6.33□□□□□ -1.4
SCN9A-202ENST00000409435 RIGQ13278 110 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 DGAT2L7PQ6IED9 249 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 GTSCR1Q86UQ5 136 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 SLC25A42Q86VD7 318 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 TGIF2LYQ8IUE0 185 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 OR10V1Q8NGI7 309 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 VSTM2LQ96N03 204 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 HIST1H4GQ99525 98 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 NRTNQ99748 197 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 OR2H1Q9GZK4 316 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 AAMDCQ9H7C9 122 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM38BQ9NVV0 291 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 SLC45A2Q9UMX9 530 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 H7C2G1 150 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 APCSP02743 223 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 IAPPP10997 89 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 GLIPR1L1Q6UWM5 242 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 WDYHV1Q96HA8 205 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM70Q9BUB7 260 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 ALX4Q9H161 411 aaPredicted RBP6.33□□□□□ -1.4
SCN9A-202ENST00000409435 LSM2Q9Y333 95 aaKnown RBP6.33□□□□□ -1.4
SCN9A-202ENST00000409435 MFNGO00587 321 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 CELA3AP09093 270 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 LINC00271P0C7V0 271 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 MS4A3Q96HJ5 214 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM56Q96MV1 263 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF714Q96N38 554 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 HSPB9Q9BQS6 159 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 FAM186AA6NE01 2351 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 UNC13CQ8NB66 2214 aa6.33□□□□□ -1.4
SCN9A-202ENST00000409435 UBE2L5PA0A1B0GUS4 154 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 PLPP3O14495 311 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 SPNP16150 400 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 RAG2P55895 527 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 NKAIN4Q8IVV8 208 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ARHGEF39Q8N4T4 335 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 CCL13Q99616 98 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 BCL2L10Q9HD36 194 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 CLEC18AA5D8T8 446 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF250P15622 560 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 HIST1H1BP16401 226 aaKnown RBP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ZP4Q12836 540 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 MMDQ15546 238 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 Q6ZSR9 355 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 CLEC18CQ8NCF0 446 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 DUSP18Q8NEJ0 188 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 OR10W1Q8NGF6 305 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ZMAT3Q9HA38 289 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms