RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TRDCB7Z8K6 153 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 TIMM23O14925 209 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 TXNL1O43396 289 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 GSTP1P09211 210 aaKnown RBP17.41■□□□□ 0.38
CLN3-207ENST00000395653 CD24P25063 80 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 KIR2DS4P43632 304 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 ARFRP1Q13795 201 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 HABP2Q14520 560 aaPredicted RBP17.41■□□□□ 0.38
CLN3-207ENST00000395653 KIR2DS1Q14954 304 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 GPR141Q7Z602 305 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 DTX3Q8N9I9 347 aa17.41■□□□□ 0.38
CLN3-207ENST00000395653 A0A0A6YYH2 397 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 IGHV1-3A0A0C4DH29 117 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 A6NJ64 397 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 LPLP06858 475 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 SCTP09683 121 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 TALDO1P37837 337 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 CTF1Q16619 201 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 SRSF7Q16629 238 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-207ENST00000395653 GPR107Q5VW38 600 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 HACD4Q5VWC8 232 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 DRAM1Q8N682 238 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 OR2AK2Q8NG84 335 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 OR4A4PQ8NGN8 299 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 OR56B4Q8NH76 319 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 RTN4IP1Q8WWV3 396 aaPredicted RBP17.4■□□□□ 0.38
CLN3-207ENST00000395653 PHF21AQ96BD5 680 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 KCTD12Q96CX2 325 aaKnown RBP17.4■□□□□ 0.38
CLN3-207ENST00000395653 AKR1E2Q96JD6 320 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 NAA50Q9GZZ1 169 aaKnown RBP17.4■□□□□ 0.38
CLN3-207ENST00000395653 RNF114Q9Y508 228 aa17.4■□□□□ 0.38
CLN3-207ENST00000395653 FAM106CPP0CH98 169 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 ZBTB25P24278 435 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 REG1BP48304 166 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 ZNF260Q3ZCT1 412 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 Q6ZS49 121 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 LYG1Q8N1E2 194 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 CAPSLQ8WWF8 208 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 SLC23A1Q9UHI7 598 aa17.39■□□□□ 0.38
CLN3-207ENST00000395653 ITGB1BP1O14713 200 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 FABP7O15540 132 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 HSPA12AO43301 675 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 OR2F2O95006 317 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 DTYMKP23919 212 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 PITPNAQ00169 270 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 PNLIPRP3Q17RR3 467 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 TGIF2LXQ8IUE1 241 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 WFDC12Q8WWY7 111 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 RBM14Q96PK6 669 aaKnown RBP17.38■□□□□ 0.37
CLN3-207ENST00000395653 ABCG5Q9H222 651 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 OR1A1Q9P1Q5 309 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 ELF5Q9UKW6 265 aaPredicted RBP17.38■□□□□ 0.37
CLN3-207ENST00000395653 IGKV1-6A0A0C4DH72 117 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 LANCL1O43813 399 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 DIRAS3O95661 229 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 SNRNP70P08621 437 aaKnown RBP17.38■□□□□ 0.37
CLN3-207ENST00000395653 CEACAM6P40199 344 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 PROK1P58294 105 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 SHISA2Q6UWI4 295 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 ODF3L1Q8IXM7 274 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 EDARADDQ8WWZ3 215 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 SLC25A33Q9BSK2 321 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 CABLES2Q9BTV7 478 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 IFI27L2Q9H2X8 130 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 DIABLOQ9NR28 239 aa17.38■□□□□ 0.37
CLN3-207ENST00000395653 ZNF230Q9UIE0 474 aaPredicted RBP17.38■□□□□ 0.37
CLN3-207ENST00000395653 TMEM235A6NFC5 223 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 HERPUD1Q15011 391 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 FBLN7Q53RD9 439 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 UBE2NLQ5JXB2 153 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 MOB3BQ86TA1 216 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 IZUMO1Q8IYV9 350 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 Q8N2B8 174 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 OR2T6Q8NHC8 308 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 DCSTAMPQ9H295 470 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 ZNF702PQ9H963 129 aa17.37■□□□□ 0.37
CLN3-207ENST00000395653 TRAV18A0A075B6X5 111 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 RPL5P46777 297 aaKnown RBP17.36■□□□□ 0.37
CLN3-207ENST00000395653 GNG2P59768 71 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 EBI3Q14213 229 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 C11orf88Q6PI97 169 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 ZNF833PQ6ZTB9 187 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 NUDCD2Q8WVJ2 157 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 PRSS22Q9GZN4 317 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 TOLLIPQ9H0E2 274 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 PARP12Q9H0J9 701 aaKnown RBP17.36■□□□□ 0.37
CLN3-207ENST00000395653 GHITMQ9H3K2 345 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 PIPOXQ9P0Z9 390 aa17.36■□□□□ 0.37
CLN3-207ENST00000395653 SAA2-SAA4A0A096LPE2 208 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 M0QZK8 103 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 HAX1O00165 279 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 ST8SIA5O15466 376 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 IGKV1D-33P01593 117 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 IGKV1-33P01594 117 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 GSTT2P0CG29 244 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 GSTT2BP0CG30 244 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 SAA2P0DJI9 122 aaPredicted RBP17.35■□□□□ 0.37
CLN3-207ENST00000395653 CD1BP29016 333 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 HES1Q14469 280 aa17.35■□□□□ 0.37
CLN3-207ENST00000395653 FAM71F2Q6NXP2 309 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 303.2 ms