RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 NPIPB11E5RHQ5 1161 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.77□□□□□ -0.53
SNCA-204ENST00000394989 GPR137BO60478 399 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 TSPAN15O95858 294 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 PRH1P02810 166 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 C10orf91Q5T1B1 145 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 CMTM1Q8IZ96 169 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 C15orf54Q8N8G6 183 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 OR10D4PQ8NGN7 298 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 ARV1Q9H2C2 271 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 CACFD1Q9UGQ2 172 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 H0Y980 276 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 AP4M1O00189 453 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 MT-ND4LP03901 98 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 F2RP25116 425 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 SULT1A2P50226 295 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 EIF5AP63241 154 aaKnown RBP11.77□□□□□ -0.53
SNCA-204ENST00000394989 CXorf66Q5JRM2 361 aaPredicted RBP11.77□□□□□ -0.53
SNCA-204ENST00000394989 SEBOXQ9HB31 216 aaPredicted RBP11.77□□□□□ -0.53
SNCA-204ENST00000394989 MBNL3Q9NUK0 354 aaKnown RBP11.77□□□□□ -0.53
SNCA-204ENST00000394989 PROCRQ9UNN8 238 aa11.77□□□□□ -0.53
SNCA-204ENST00000394989 IGHV2OR16-5A0A0B4J2B6 119 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 CLEC18AA5D8T8 446 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 FBP1P09467 338 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 NDUFB7P17568 137 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 MIDNQ504T8 468 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 GPR157Q5UAW9 335 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 GFI1BQ5VTD9 330 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 IL34Q6ZMJ4 242 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 CLEC18CQ8NCF0 446 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 OR5D13Q8NGL4 314 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 SAT2Q96F10 170 aaPredicted RBP11.76□□□□□ -0.53
SNCA-204ENST00000394989 FAM215AQ9Y5M1 114 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 A0A0G2JRQ6 117 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 HAND1O96004 215 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 TFF1P04155 84 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 FABP6P51161 128 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 USF2Q15853 346 aaPredicted RBP11.76□□□□□ -0.53
SNCA-204ENST00000394989 C4orf17Q53FE4 359 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 PRAMEF6Q5VXH4 476 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 Q6ZS92 163 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 MSL2Q9HCI7 577 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 OR14J1Q9UGF5 321 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 TRAPPC2LQ9UL33 140 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 WIPI2Q9Y4P8 454 aa11.76□□□□□ -0.53
SNCA-204ENST00000394989 PROB1E7EW31 1015 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 SH2D1BO14796 132 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 KITLGP21583 273 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 S100A2P29034 98 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 FIP1L1Q6UN15 594 aaKnown RBP11.75□□□□□ -0.53
SNCA-204ENST00000394989 OR5H1A6NKK0 313 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 UMAD1C9J7I0 102 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 HEXAP06865 529 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 VDAC1P21796 283 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 NKX2-1P43699 371 aaPredicted RBP11.75□□□□□ -0.53
SNCA-204ENST00000394989 SULT1A1P50225 295 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 C21orf62-AS1Q17RA5 79 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 EIF5AL1Q6IS14 154 aaKnown RBP11.75□□□□□ -0.53
SNCA-204ENST00000394989 ZNF343Q6P1L6 599 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 WDR82Q6UXN9 313 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 MOB1BQ7L9L4 216 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 BHLHA15Q7RTS1 189 aaPredicted RBP11.75□□□□□ -0.53
SNCA-204ENST00000394989 ODF3L1Q8IXM7 274 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 OR10V1Q8NGI7 309 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 OR51H1Q8NH63 302 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 MAGT1Q9H0U3 335 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 TAAR3PQ9P1P4 343 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 METTL1Q9UBP6 276 aaKnown RBP11.75□□□□□ -0.53
SNCA-204ENST00000394989 GATCO43716 136 aaKnown RBP11.75□□□□□ -0.53
SNCA-204ENST00000394989 TMEM50AO95807 157 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 AGAP20933 346 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 NBL1P41271 181 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
SNCA-204ENST00000394989 P2RY6Q15077 328 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 MSMPQ1L6U9 139 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 LUZP4Q9P127 313 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 SLC25A15Q9Y619 301 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 RFNGQ9Y644 331 aa11.75□□□□□ -0.53
SNCA-204ENST00000394989 KIAA2026Q5HYC2 2103 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 KALRNO60229 2985 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 DUXBA0A1W2PPF3 345 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 FAM24AA6NFZ4 105 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 ZNF729A6NN14 1252 aaPredicted RBP11.74□□□□□ -0.53
SNCA-204ENST00000394989 TIMM8AO60220 97 aaPredicted RBP11.74□□□□□ -0.53
SNCA-204ENST00000394989 PSG2P11465 335 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 LMO1P25800 156 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 GNMTQ14749 295 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 HMGN3Q15651 99 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 ZNF674Q2M3X9 581 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 OR2C3Q8N628 320 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 RBMXL3Q8N7X1 1067 aaKnown RBP11.74□□□□□ -0.53
SNCA-204ENST00000394989 TCEAL7Q9BRU2 100 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 IGSF23A1L1A6 192 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 SSSCA1O60232 199 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 NXPH3O95157 252 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 ZNF474Q6S9Z5 364 aaPredicted RBP11.74□□□□□ -0.53
SNCA-204ENST00000394989 BTNL8Q6UX41 500 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 GINS3Q9BRX5 216 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 SH3BGRL3Q9H299 93 aa11.74□□□□□ -0.53
SNCA-204ENST00000394989 CXXC4Q9H2H0 198 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms