RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CAMLGP49069 296 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF674Q2M3X9 581 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 OR2T2Q6IF00 324 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 WFDC8Q8IUA0 241 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 GCNT2Q8N0V5 402 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 OR52M1Q8NGK5 317 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 RDH5Q92781 318 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 TP53RKQ96S44 253 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 SEC11CQ9BY50 192 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 TMEM222Q9H0R3 208 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 DOK5Q9P104 306 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 POMT1Q9Y6A1 747 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 PCSK5Q92824 1860 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 PRRC2CQ9Y520 2896 aaKnown RBP8.23□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF503-AS2A6NEH8 195 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 HSD17B6O14756 317 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 CCL25O15444 150 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 NAPSAO96009 420 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF616Q08AN1 781 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 MST1LQ2TV78 715 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 C15orf54Q8N8G6 183 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 FDCSPQ8NFU4 85 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 OR4A4PQ8NGN8 299 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 ERGIC1Q969X5 290 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 KIRREL1Q96J84 757 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 C20orf24Q9BUV8 137 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 RTL8AQ9BWD3 113 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 CARHSP1Q9Y2V2 147 aaKnown RBP8.23□□□□□ -1.09
COL6A3-204ENST00000392003 LIPGQ9Y5X9 500 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 ATP23Q9Y6H3 246 aa8.23□□□□□ -1.09
COL6A3-204ENST00000392003 B9A039 149 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 SEC11BP0C7V7 166 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 CA6P23280 308 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 RND3P61587 244 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 MDP1Q86V88 176 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 CNEP1R1Q8N9A8 125 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 SUMF2Q8NBJ7 301 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 BCL2L2Q92843 193 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-204ENST00000392003 SLC25A31Q9H0C2 315 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF430Q9H8G1 570 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-204ENST00000392003 RPS10P5Q9NQ39 176 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 SMCO4Q9NRQ5 59 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 RBM7Q9Y580 266 aaKnown RBP8.22□□□□□ -1.09
COL6A3-204ENST00000392003 PUS1Q9Y606 427 aaKnown RBP eCLIP8.22□□□□□ -1.09
COL6A3-204ENST00000392003 COL27A1Q8IZC6 1860 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-204ENST00000392003 TRAV17A0A0B4J275 112 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 NKX2-6A6NCS4 301 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 DEGS1O15121 323 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 LYG1Q8N1E2 194 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 GAPTQ8N292 157 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 NRIP2Q9BQI9 281 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 PKIBQ9C010 78 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 GP6Q9HCN6 339 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 CRIM1Q9NZV1 1036 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 IL36RNQ9UBH0 155 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 ACACAQ13085 2346 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 J3QT63 122 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 CD80P33681 288 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 OR3A1P47881 315 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 SPATA46Q5T0L3 261 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 LEMD1Q68G75 181 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 BEND2Q8NDZ0 799 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF596Q8TC21 504 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 WDYHV1Q96HA8 205 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF488Q96MN9 340 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 FGF23Q9GZV9 251 aaPredicted RBP8.22□□□□□ -1.09
COL6A3-204ENST00000392003 PPIAL4AQ9Y536 164 aa8.22□□□□□ -1.09
COL6A3-204ENST00000392003 DUXBA0A1W2PPF3 345 aa8.21□□□□□ -1.09
COL6A3-204ENST00000392003 ZNF705GA8MUZ8 300 aaPredicted RBP8.21□□□□□ -1.09
COL6A3-204ENST00000392003 AQP7O14520 342 aa8.21□□□□□ -1.09
COL6A3-204ENST00000392003 IL24Q13007 206 aa8.21□□□□□ -1.09
COL6A3-204ENST00000392003 OR2C3Q8N628 320 aa8.21□□□□□ -1.09
COL6A3-204ENST00000392003 COMMD1Q8N668 190 aa8.21□□□□□ -1.09
COL6A3-204ENST00000392003 HSD17B11Q8NBQ5 300 aa8.21□□□□□ -1.09
COL6A3-204ENST00000392003 STRAPQ9Y3F4 350 aaKnown RBP8.21□□□□□ -1.09
COL6A3-204ENST00000392003 MT-ND4LP03901 98 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 STAG3L3P0CL85 134 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 RPL29P47914 159 aaKnown RBP8.21□□□□□ -1.1
COL6A3-204ENST00000392003 DVL1P1P54792 670 aaPredicted RBP8.21□□□□□ -1.1
COL6A3-204ENST00000392003 NHLH1Q02575 133 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 ZNF266Q14584 549 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 C10orf91Q5T1B1 145 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 BTNL8Q6UX41 500 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 ZNF818PQ6ZRF7 136 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 C11orf42Q8N5U0 333 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 GMPPAQ96IJ6 420 aaPredicted RBP8.21□□□□□ -1.1
COL6A3-204ENST00000392003 HS3ST6Q96QI5 342 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 TRIB1Q96RU8 372 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 PARP12Q9H0J9 701 aaKnown RBP8.21□□□□□ -1.1
COL6A3-204ENST00000392003 CCL28Q9NRJ3 127 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 POLDIP2Q9Y2S7 368 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 SHANK1Q9Y566 2161 aa8.21□□□□□ -1.1
COL6A3-204ENST00000392003 DMDP11532 3685 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 ZNF891A8MT65 544 aaPredicted RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SS18L1O75177 396 aaPredicted RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SERPINE2P07093 398 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 IDH3GP51553 393 aaPredicted RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SLAQ13239 276 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 Q6ZPA2 131 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 Q8IYB0 196 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms