RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 PTP4A1Q93096 173 aa10.96□□□□□ -0.66
VPS13A-204ENST00000376634 EML5Q05BV3 1969 aa10.96□□□□□ -0.66
VPS13A-204ENST00000376634 NKX2-2O95096 273 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 PTPMT1Q8WUK0 201 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 ZNF665Q9H7R5 613 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 CEP192Q8TEP8 1941 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM210A6NLX4 147 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 WNT9BO14905 357 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 HYAL1Q12794 435 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM78Q5T7P6 136 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 PLXNA2O75051 1894 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 RSPO2Q6UXX9 243 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 MRGPRGQ86SM5 289 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 TEX29Q8N6K0 151 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 CDKN2AP42771 156 aaKnown RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 INSL4Q14641 139 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 ZNF107Q9UII5 783 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 TMEFF2Q9UIK5 374 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 MRPL58Q14197 206 aaKnown RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 SEZ6L2Q6UXD5 910 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 ISOC2Q96AB3 205 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 VDAC1P21796 283 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 MAS1LP35410 378 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 SELENOPP49908 381 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 RAE1P78406 368 aaKnown RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 UBE2V2Q15819 145 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 NEU3Q9UQ49 428 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 LEUTXA8MZ59 168 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 EML2O95834 649 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 LDLRAD3Q86YD5 345 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 MBD3L1Q8WWY6 194 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 SOX21Q9Y651 276 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM136Q6ZRR5 245 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 BVESQ8NE79 360 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 LY75O60449 1722 aa10.95□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM196Q5HYL7 178 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 TMSB15BA0A087X1C1 80 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 CBLN2Q8IUK8 224 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 MARVELD1Q9BSK0 173 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 TNFRSF12AQ9NP84 129 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 LOXL3P58215 753 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 CLEC2AQ6UVW9 174 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 PPP1R17O96001 155 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 PPYP01298 95 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 LSM6P62312 80 aaKnown RBP10.94□□□□□ -0.66
VPS13A-204ENST00000376634 ZNF880Q6PDB4 577 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 RPL31P62899 125 aaKnown RBP10.94□□□□□ -0.66
VPS13A-204ENST00000376634 AESQ08117 197 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 GUCD1Q96NT3 240 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 NUBP1P53384 320 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 WDFY1Q8IWB7 410 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 MS4A7Q9GZW8 240 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-204ENST00000376634 RNF7Q9UBF6 113 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 CDC42EP3Q9UKI2 254 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 CTSVO60911 334 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 HSF4Q9ULV5 492 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM56-RWDD3S4R434 201 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 H3BQ15 152 aa10.94□□□□□ -0.66
VPS13A-204ENST00000376634 CD300LDQ6UXZ3 194 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 RPL34P49207 117 aaKnown RBP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 CTXND1A0A1B0GTU2 59 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 A0A1B0GV72 72 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 MPDU1O75352 247 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 NLRC5Q86WI3 1866 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 A0A1W2PS18 150 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 C21orf140B9A014 251 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 PPM1DO15297 605 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 FAM106CPP0CH98 169 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 PRF1P14222 555 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 WNT5AP41221 380 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 C11orf68Q9H3H3 251 aaKnown RBP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 TNRC6AQ8NDV7 1962 aaKnown RBP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 LGALS3P17931 250 aaKnown RBP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 GZMHP20718 246 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 CKS2P33552 79 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM50BP56557 158 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 PCGF1Q9BSM1 259 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 PARD6GQ9BYG4 376 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 OR2H1Q9GZK4 316 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 TMEM189A5PLL7 270 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 CDIPTO14735 213 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 HYPMO75409 117 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 SFTPCP11686 197 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 CDX1P47902 265 aaPredicted RBP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 PGFP49763 221 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 NSUN5P2Q63ZY6 315 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 CLEC18BQ6UXF7 455 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 TBX21Q9UL17 535 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 FAM208BQ5VWN6 2430 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 S1PR2O95136 353 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 MFAP2P55001 183 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 PIGYQ3MUY2 71 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 RBFOX2O43251 390 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS13A-204ENST00000376634 LRRC75BQ2VPJ9 315 aa10.93□□□□□ -0.66
VPS13A-204ENST00000376634 RTN4RL1Q86UN2 441 aaPredicted RBP10.92□□□□□ -0.66
VPS13A-204ENST00000376634 NUDT10Q8NFP7 164 aa10.92□□□□□ -0.66
VPS13A-204ENST00000376634 NUDT11Q96G61 164 aa10.92□□□□□ -0.66
VPS13A-204ENST00000376634 SLC52A3Q9NQ40 469 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms