RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 KRTAP27-1Q3LI81 207 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF818PQ6ZRF7 136 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 SAXO1Q8IYX7 474 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 KIR2DL5AQ8N109 375 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 GAPTQ8N292 157 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 MAP1LC3BQ9GZQ8 125 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 OR51I2Q9H344 312 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 MANBALQ9NQG1 85 aa13.55□□□□□ -0.24
HMGA1-202ENST00000347617 SPEGQ15772 3267 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 SLC22A20A6NK97 555 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 EREGO14944 169 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF737O75373 536 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF205O95201 554 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 IDH3GP51553 393 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-202ENST00000347617 MEF2BQ02080 365 aaPredicted RBP13.54□□□□□ -0.24
HMGA1-202ENST00000347617 ABHD17BQ5VST6 288 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 LCN15Q6UWW0 184 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 MRPL41Q8IXM3 137 aaKnown RBP13.54□□□□□ -0.24
HMGA1-202ENST00000347617 C20orf196Q8IYI0 205 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 GPR137CQ8N3F9 429 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF525Q8N782 197 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 NAXEQ8NCW5 288 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 OR2T10Q8NGZ9 312 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 OR1F12Q8NHA8 337 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 DYRK2Q92630 601 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 EXTL1Q92935 676 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 ULBP2Q9BZM5 246 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 PCSK5Q92824 1860 aa13.54□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF816-ZNF321PA0A0X1KG74 233 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 SYNGR3O43761 229 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 NAPSAO96009 420 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 HLA-HP01893 362 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 MBP02144 154 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 OR10J1P30954 320 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 PSMB3P49720 205 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF726P1Q15940 193 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 RBM24Q9BX46 236 aaKnown RBP13.53□□□□□ -0.24
HMGA1-202ENST00000347617 OR6C3Q9NZP0 311 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 EML6Q6ZMW3 1958 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 DLL1O00548 723 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 COX5BP10606 129 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 CD99P14209 185 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 F2RP25116 425 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 TDGF1P3P51864 188 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 B3GALT5-AS1P59052 145 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 RPL23P62829 140 aaKnown RBP13.53□□□□□ -0.24
HMGA1-202ENST00000347617 ZNF92Q03936 586 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 GBGT1Q8N5D6 347 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 LRFN3Q9BTN0 628 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 SNHG12Q9BXW3 62 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 SLC39A9Q9NUM3 307 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 IL17BQ9UHF5 180 aa13.53□□□□□ -0.24
HMGA1-202ENST00000347617 BOKQ9UMX3 212 aaPredicted RBP13.53□□□□□ -0.24
HMGA1-202ENST00000347617 KIAA1549Q9HCM3 1950 aa13.52□□□□□ -0.24
HMGA1-202ENST00000347617 CUL9Q8IWT3 2517 aa13.52□□□□□ -0.24
HMGA1-202ENST00000347617 SPAARA0A1B0GVQ0 90 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 KIAA1324LA8MWY0 1029 aaPredicted RBP13.52□□□□□ -0.25
HMGA1-202ENST00000347617 TM4SF5O14894 197 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 LCATP04180 440 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 PHYHD1Q5SRE7 291 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 RAET1LQ5VY80 246 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 FAM173AQ9BQD7 235 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 FKBP11Q9NYL4 201 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 ZNF581Q9P0T4 197 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 SHANK1Q9Y566 2161 aa13.52□□□□□ -0.25
HMGA1-202ENST00000347617 hCG_38984A0A1B0GV85 526 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 OR6C6A6NF89 314 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 MARCH11A6NNE9 402 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 SYNGR2O43760 224 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 PGLYRP1O75594 196 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 OR7C1O76099 320 aaPredicted RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 LINC00614P0C842 121 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 APLNRP35414 380 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 CNN1P51911 297 aaKnown RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 RANP62826 216 aaKnown RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 PLCXD3Q63HM9 321 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 Q6ZPA2 131 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 LHX4Q969G2 390 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 GPR146Q96CH1 333 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 REPIN1Q9BWE0 567 aaKnown RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 SF3B5Q9BWJ5 86 aaKnown RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 WDR61Q9GZS3 305 aaKnown RBP13.51□□□□□ -0.25
HMGA1-202ENST00000347617 ASCL3Q9NQ33 180 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 ATP23Q9Y6H3 246 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 AHCTF1Q8WYP5 2266 aa13.51□□□□□ -0.25
HMGA1-202ENST00000347617 TRBV6-6A0A0A6YYG2 114 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 LRRC3CA6NJW4 275 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 FAM90A26D6RGX4 464 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 NEURL1O76050 574 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 SERPINE2P07093 398 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 RAC3P60763 192 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 PCBD1P61457 104 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 P2RY6Q15077 328 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 ATP6V1FQ16864 119 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 LINC00596Q86U02 117 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 OR2AE1Q8NHA4 323 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 RSG1Q9BU20 258 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 RBKSQ9H477 322 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 CHODLQ9H9P2 273 aa13.5□□□□□ -0.25
HMGA1-202ENST00000347617 PSENENQ9NZ42 101 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms