RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 BATF2Q8N1L9 274 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ZNF565Q8N9K5 539 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 CYYR1Q96J86 154 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 PFDN5Q99471 154 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 CXXC4Q9H2H0 198 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ZNF442Q9H7R0 627 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 ZNF581Q9P0T4 197 aa10.86□□□□□ -0.67
CLK3-201ENST00000345005 RALYQ9UKM9 306 aaKnown RBP10.86□□□□□ -0.67
CLK3-201ENST00000345005 CADP27708 2225 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 ZFYVE26Q68DK2 2539 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 MBPP02686 304 aaPredicted RBP10.85□□□□□ -0.67
CLK3-201ENST00000345005 GLRXP35754 106 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 PIGPP57054 158 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 MZT1Q08AG7 82 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 TMEM187Q14656 261 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 SUMF2Q8NBJ7 301 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 SPIN2AQ99865 258 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 SPIN2BQ9BPZ2 258 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 HDHD3Q9BSH5 251 aaPredicted RBP10.85□□□□□ -0.67
CLK3-201ENST00000345005 SCRT1Q9BWW7 348 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 SLC25A31Q9H0C2 315 aa10.85□□□□□ -0.67
CLK3-201ENST00000345005 CHD3Q12873 2000 aaKnown RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 H0YL77 283 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 SLC31A2O15432 143 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 NDUFS6O75380 124 aaKnown RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 CDS2O95674 445 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 MMP9P14780 707 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 RPS23P62266 143 aaKnown RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 ZNF154Q13106 437 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 DAZAP2Q15038 168 aaPredicted RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 PDCD1Q15116 288 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 AKIRIN2Q53H80 203 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 BRICD5Q6PL45 260 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 DPPA3Q6W0C5 159 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 RBMS3Q6XE24 437 aaKnown RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 SSX9Q7RTT3 188 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 REC114Q7Z4M0 266 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 WDR86Q86TI4 376 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 FAM219AQ8IW50 185 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 ST6GALNAC3Q8NDV1 305 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 RTN4IP1Q8WWV3 396 aaPredicted RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 MAFIPQ8WZ33 124 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 MRPL24Q96A35 216 aaKnown RBP10.84□□□□□ -0.67
CLK3-201ENST00000345005 C18orf12Q96KH6 178 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 HS3ST6Q96QI5 342 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 TOLLIPQ9H0E2 274 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 HIPK2Q9H2X6 1198 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 PRORYQ9H606 182 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 SIRT7Q9NRC8 400 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 PRR13Q9NZ81 148 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 FZR1Q9UM11 496 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 BSNQ9UPA5 3926 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 TRGV8A0A0C4DH27 118 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 MLNRO43193 412 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 RHBDL1O75783 438 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 OR2C1O95371 312 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 GRPP07492 148 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 CD300LFQ8TDQ1 290 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 ZNF488Q96MN9 340 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 PLA2G2EQ9NZK7 142 aa10.84□□□□□ -0.67
CLK3-201ENST00000345005 DUXBA0A1W2PPF3 345 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 A0A1W2PPH5 198 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 A6NLC8 198 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 SCGB1D2O95969 90 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 IGHV3-13P01766 116 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 PGA5P0DJD9 388 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 HOXA5P20719 270 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 CA7P43166 264 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 ERVK11-1P61568 191 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 NKX6-1P78426 367 aaPredicted RBP10.83□□□□□ -0.68
CLK3-201ENST00000345005 SRSF7Q16629 238 aaKnown RBP eCLIP10.83□□□□□ -0.68
CLK3-201ENST00000345005 ADAM5Q6NVV9 412 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 OR13D1Q8NGV5 346 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 GNPNAT1Q96EK6 184 aaPredicted RBP10.83□□□□□ -0.68
CLK3-201ENST00000345005 TMEM68Q96MH6 324 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 GGACTQ9BVM4 153 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 SMIM3Q9BZL3 60 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 ZNF286AQ9HBT8 521 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 SPTA1P02549 2419 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 POLEQ07864 2286 aa10.83□□□□□ -0.68
CLK3-201ENST00000345005 IGKV1D-8A0A087WSZ0 117 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 B4DEV8 164 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 CDIPTO14735 213 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 HBE1P02100 147 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 RAB4AP20338 218 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 CD40P25942 277 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 S100A2P29034 98 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 CCKARP32238 428 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 CEACAM6P40199 344 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 KLF3P57682 345 aaPredicted RBP10.82□□□□□ -0.68
CLK3-201ENST00000345005 IGFBP7Q16270 282 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 TMEM108Q6UXF1 575 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 Q6ZR03 302 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 DYRK2Q92630 601 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 ERGIC1Q969X5 290 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 RBMXL1Q96E39 390 aaKnown RBP10.82□□□□□ -0.68
CLK3-201ENST00000345005 C2orf88Q9BSF0 95 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 RIMS4Q9H426 269 aaPredicted RBP10.82□□□□□ -0.68
CLK3-201ENST00000345005 IL36RNQ9UBH0 155 aa10.82□□□□□ -0.68
CLK3-201ENST00000345005 DUSP13Q9UII6 198 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms