RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 OR52L2PQ8NGH6 319 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 OR5D13Q8NGL4 314 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 FGFBP3Q8TAT2 258 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 CTDSP1Q9GZU7 261 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 CLCF1Q9UBD9 225 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 TOX3O15405 576 aaPredicted RBP10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 TGOLN2O43493 480 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 SUCLG1P53597 346 aaKnown RBP10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 FOXO1Q12778 655 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 NFAM1Q8NET5 270 aaPredicted RBP10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 BORCS7Q96B45 105 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 CIB3Q96Q77 187 aaPredicted RBP10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 ANGPTL4Q9BY76 406 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 PARD6AQ9NPB6 346 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 METTL1Q9UBP6 276 aaKnown RBP10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 ALPK3Q96L96 1907 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 TRGV5A0A0B4J1U4 118 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 IGKV1-12A0A0C4DH73 117 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 IGKV1D-12P01611 117 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 MEOX1P50221 254 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 FGF12P61328 243 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 PCOLCEQ15113 449 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 SLC23A3Q6PIS1 610 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 SIGLECL1Q8N7X8 197 aa10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 RNF166Q96A37 237 aaPredicted RBP10.67□□□□□ -0.7
SNRNP48-201ENST00000342415 IGHV1-45A0A0A0MS14 117 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 FCN1O00602 326 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 CELA3AP09093 270 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 TIGITQ495A1 244 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 CYB5R2Q6BCY4 276 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 SPNS3Q6ZMD2 512 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 FGFRL1Q8N441 504 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 TMEM178AQ8NBL3 297 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 MSI2Q96DH6 328 aaKnown RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 BARX1Q9HBU1 254 aaPredicted RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 NAT8BQ9UHF3 227 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 TUBD1Q9UJT1 453 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 KLF13Q9Y2Y9 288 aaPredicted RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 ATP23Q9Y6H3 246 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PLCE1Q9P212 2302 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PRR14LQ5THK1 2151 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PLXNA2O75051 1894 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 RHBDL1O75783 438 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 RAB4AP20338 218 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 MPLP40238 635 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 H1FOOQ8IZA3 346 aaPredicted RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 LYG1Q8N1E2 194 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 RBMXL3Q8N7X1 1067 aaKnown RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PAM16Q9Y3D7 125 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 VSTM5A8MXK1 200 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 RNF224P0DH78 156 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 DEFA4P12838 97 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 LHFPL1Q86WI0 220 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 OR5A2Q8NGI9 324 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 GINS3Q9BRX5 216 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PCED1AQ9H1Q7 454 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 DLL3Q9NYJ7 618 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.66□□□□□ -0.75e-8■■■□□ 15.8
SNRNP48-201ENST00000342415 TRAV38-1A0A0B4J264 116 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 A0A1B0GU03 582 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 NPIPB13A6NJU9 1138 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 NPIPB4C9JG80 1138 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 HSPB1P04792 205 aaKnown RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 CD5P06127 495 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 QRFPP83859 136 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 MEF2BQ02080 365 aaPredicted RBP10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 SLC35E3Q7Z769 313 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 MDP1Q86V88 176 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 M1APQ8TC57 530 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 SIRT7Q9NRC8 400 aa10.66□□□□□ -0.7
SNRNP48-201ENST00000342415 PCNX3Q9H6A9 2034 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 OR5B21A6NL26 309 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 NDUFB4O95168 129 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 SRP19P09132 144 aaKnown RBP10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 IQCJQ1A5X6 159 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 MST1LQ2TV78 715 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 CEACAM21Q3KPI0 293 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 OR1L1Q8NH94 360 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 SGMS2Q8NHU3 365 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 GALNT14Q96FL9 552 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 NUDT16L1Q9BRJ7 211 aaKnown RBP10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 TMEM147Q9BVK8 224 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 ZNF331Q9NQX6 463 aaPredicted RBP10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 PITPNC1Q9UKF7 332 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 ZDHHC8Q9ULC8 765 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 M0R1B8 84 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 GYPAP02724 150 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 ZNF718Q3SXZ3 478 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 FAM89BQ8N5H3 189 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 SLC25A40Q8TBP6 338 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 DAZAP1Q96EP5 407 aaKnown RBP10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 CDX2Q99626 313 aaPredicted RBP10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 TM2D1Q9BX74 207 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 KIAA1671Q9BY89 1806 aa10.65□□□□□ -0.7
SNRNP48-201ENST00000342415 IGKV1-27A0A075B6S5 117 aa10.65□□□□□ -0.71
SNRNP48-201ENST00000342415 MPC1Q9Y5U8 109 aa10.65□□□□□ -0.71
SNRNP48-201ENST00000342415 NCOA6Q14686 2063 aaPredicted RBP10.65□□□□□ -0.71
SNRNP48-201ENST00000342415 DBX1A6NMT0 343 aa10.64□□□□□ -0.71
SNRNP48-201ENST00000342415 CYB5R3P00387 301 aaPredicted RBP10.64□□□□□ -0.71
SNRNP48-201ENST00000342415 PAX6P26367 422 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms