RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TRAPPC3O43617 180 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 NDUFA2O43678 99 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 MYO1DO94832 1006 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 IGLV3-19P01714 112 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 HMGN1P05114 100 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CALB1P05937 261 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 FAM228BP0C875 321 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 LIMS3P0CW19 117 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 LIMS4P0CW20 117 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 PET100P0DJ07 73 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CASP1P29466 404 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 GTF2H1P32780 548 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 PHBP35232 272 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 APLNRP35414 380 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 HSPA9P38646 679 aaKnown RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 HSPA13P48723 471 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 GDI2P50395 445 aaKnown RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 RAB38P57729 211 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TAS2R31P59538 309 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 GNG2P59768 71 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 KRTAP10-10P60014 251 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 S100A12P80511 92 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 MRPS25P82663 173 aaKnown RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TRIP13Q15645 432 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ALX1Q15699 326 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM249Q2WGJ8 235 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TTMPQ5BVD1 217 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TIMM23BQ5SRD1 257 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 IDNKQ5T6J7 187 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 C8orf74Q6P047 294 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CLEC18BQ6UXF7 455 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 FAM151BQ6UXP7 276 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 IDO2Q6ZQW0 420 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 STX12Q86Y82 276 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 RIBC1Q8N443 379 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TBC1D19Q8N5T2 526 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF680Q8NEM1 530 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 OR4K17Q8NGC6 315 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 OR52P1PQ8NH57 321 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 OR51Q1Q8NH59 317 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 OR5AK3PQ8NH89 298 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 OR1S1Q8NH92 325 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ENKURQ8TC29 256 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF721Q8TF20 911 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 PHF10Q8WUB8 498 aaKnown RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 RTN4IP1Q8WWV3 396 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 NELFBQ8WX92 580 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CDS1Q92903 461 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 SLC25A46Q96AG3 418 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM159Q96B96 161 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ZMYND19Q96E35 227 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 KCNS1Q96KK3 526 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CAPZA3Q96KX2 299 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 C18orf15Q96N68 181 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 EMC6Q9BV81 110 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TMED9Q9BVK6 235 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 SFXN3Q9BWM7 321 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF717Q9BY31 904 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 BCL2L14Q9BZR8 327 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 FGF23Q9GZV9 251 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 DSN1Q9H410 356 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 METTL8Q9H825 291 aaKnown RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 UCK1Q9HA47 277 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ASCL3Q9NQ33 180 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TAS2R7Q9NYW3 318 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 MARCOQ9UEW3 520 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 ORC6Q9Y5N6 252 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 A0A1B0GUL6 1792 aa1.84□□□□□ -2.12
HMGB1-201ENST00000326004 UBR2Q8IWV8 1755 aa1.84□□□□□ -2.12
HMGB1-201ENST00000326004 FANCMQ8IYD8 2048 aa1.84□□□□□ -2.12
HMGB1-201ENST00000326004 LOXHD1Q8IVV2 1947 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ASXL3Q9C0F0 2248 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 LRRK2Q5S007 2527 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 NF1P21359 2839 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 AKAP13Q12802 2813 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ANKRD36CQ5JPF3 1778 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 COL11A1P12107 1806 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 A0A0A6YYH2 397 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 A6NJ64 397 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF98A6NK75 572 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 LINC00587B1AMM8 73 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 NDUFC2-KCTD14E9PQ53 114 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 MANBAO00462 879 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 TAAR5O14804 337 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 CRXO43186 299 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 NDUFS5O43920 106 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 MPZL2O60487 215 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 EIF1BO60739 113 aaKnown RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 SNAP29O95721 258 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 IGHV3-11P01762 117 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 OCM2P0CE71 109 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF35P13682 527 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF14P17017 642 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RPA3P35244 121 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 EIF1P41567 113 aaKnown RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 KIR3DL2P43630 455 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 CDC34P49427 236 aaPredicted RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RPL14P50914 215 aaKnown RBP1.83□□□□□ -2.12
HMGB1-201ENST00000326004 RAB14P61106 215 aa1.83□□□□□ -2.12
HMGB1-201ENST00000326004 NCALDP61601 193 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms