RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 NEURL1O76050 574 aa13.78□□□□□ -0.2
USP42-201ENST00000306177 ARG1P05089 322 aa13.78□□□□□ -0.2
USP42-201ENST00000306177 GPR6P46095 362 aaPredicted RBP13.78□□□□□ -0.2
USP42-201ENST00000306177 HNRNPA3P51991 378 aaKnown RBP13.78□□□□□ -0.2
USP42-201ENST00000306177 DLK1P80370 383 aa13.78□□□□□ -0.2
USP42-201ENST00000306177 SNAI3Q3KNW1 292 aa13.78□□□□□ -0.2
USP42-201ENST00000306177 KHDC3LQ587J8 217 aa13.78□□□□□ -0.2
USP42-201ENST00000306177 SF3B6Q9Y3B4 125 aaKnown RBP13.78□□□□□ -0.2
USP42-201ENST00000306177 PRF1P14222 555 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 LINC01590Q5TEZ4 76 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 UNQ9370/PRO34162Q6UXP9 181 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 GTF2H5Q6ZYL4 71 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 SRXN1Q9BYN0 137 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 NPIPB13A6NJU9 1138 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 NPIPB4C9JG80 1138 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 MFNGO00587 321 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 PIN1P1O15428 100 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 FAM157CP0CG43 387 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 COX5BP10606 129 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 REG1BP48304 166 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 ZNF596Q8TC21 504 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 G6PC2Q9NQR9 355 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 TNFRSF19Q9NS68 423 aa13.77□□□□□ -0.2
USP42-201ENST00000306177 SEMA7AO75326 666 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 IGLV3-19P01714 112 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 MMP9P14780 707 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 PMS2P11Q13670 270 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 DCAF12L2Q5VW00 463 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 ZNF716A6NP11 495 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 SCTP09683 121 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 MPV17P39210 176 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 NAAAQ02083 359 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 PRDM14Q9GZV8 571 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 ADRA2AP08913 450 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 ERVFRD-1P60508 538 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 OR8I2Q8N0Y5 310 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 OR8G5Q8NG78 346 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 ITLN1Q8WWA0 313 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 TMEM208Q9BTX3 173 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 TMEM222Q9H0R3 208 aa13.77□□□□□ -0.21
USP42-201ENST00000306177 TEX50A0A1B0GTY4 177 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 IGSF23A1L1A6 192 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 C7orf77A4D0Y5 90 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 CTSSP25774 331 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 VAMP3Q15836 100 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 CBY1Q9Y3M2 126 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 P01737 135 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 EGR4Q05215 589 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 FDX2Q6P4F2 183 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 TCTEX1D1Q8N7M0 179 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 SNX22Q96L94 193 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 NHLH1Q02575 133 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 NHLH2Q02577 135 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 SIRT7Q9NRC8 400 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 IL17BQ9UHF5 180 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 HSF4Q9ULV5 492 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 TCAPO15273 167 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 USF1P22415 310 aaPredicted RBP13.76□□□□□ -0.21
USP42-201ENST00000306177 TMPRSS3P57727 454 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 TMEM255AQ5JRV8 349 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 ZDHHC8Q9ULC8 765 aa13.76□□□□□ -0.21
USP42-201ENST00000306177 HELTA6NFD8 242 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 TMEM229AB2RXF0 380 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 DEDDO75618 318 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 PGA5P0DJD9 388 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 CD1BP29016 333 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 ZNF645Q8N7E2 425 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 ISOC2Q96AB3 205 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 ZNHIT1O43257 154 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 OR5AL1P0C617 328 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 SERF2P84101 59 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 C5orf17Q8NAS9 161 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 NPAS1Q99742 590 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 ELF5Q9UKW6 265 aaPredicted RBP13.75□□□□□ -0.21
USP42-201ENST00000306177 AP4M1O00189 453 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 SRSF10O75494 262 aaKnown RBP13.75□□□□□ -0.21
USP42-201ENST00000306177 ZNF250P15622 560 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 ZNF826PQ6ZT77 177 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 SAXO1Q8IYX7 474 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 MRPL30Q8TCC3 161 aaKnown RBP13.75□□□□□ -0.21
USP42-201ENST00000306177 H3BQ15 152 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 APELAP0DMC3 54 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 RCC1P18754 421 aaPredicted RBP13.75□□□□□ -0.21
USP42-201ENST00000306177 COL8A1P27658 744 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 TCL1AP56279 114 aa13.75□□□□□ -0.21
USP42-201ENST00000306177 LNP1A1A4G5 178 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 CRISP2P16562 243 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 TMEM183BQ1AE95 376 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 C10orf128Q5T292 105 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 CBLN2Q8IUK8 224 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 ABHD14BQ96IU4 210 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 PCGF1Q9BSM1 259 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 PATJQ8NI35 1801 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 ELOA3CA0A087WX78 387 aaPredicted RBP13.74□□□□□ -0.21
USP42-201ENST00000306177 OR2T8A6NH00 312 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 GAPDHP04406 335 aaKnown RBP13.74□□□□□ -0.21
USP42-201ENST00000306177 CXCL2P19875 107 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 LAIR2Q6ISS4 152 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 PPP1R32Q7Z5V6 425 aa13.74□□□□□ -0.21
USP42-201ENST00000306177 ABCA7Q8IZY2 2146 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms