RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PLEKHB1Q9UF11 243 aaPredicted RBP11.12□□□□□ -0.63
USP40-201ENST00000251722 ZFP30Q9Y2G7 519 aa11.12□□□□□ -0.63
USP40-201ENST00000251722 GCSHP23434 173 aa11.12□□□□□ -0.63
USP40-201ENST00000251722 MAP1LC3CQ9BXW4 147 aa11.12□□□□□ -0.63
USP40-201ENST00000251722 UCP2P55851 309 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 SAXO1Q8IYX7 474 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 C14orf144Q96I85 54 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 MEGF9Q9H1U4 602 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 HS3ST3B1Q9Y662 390 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 A0A0J9YW62 118 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 CORTO00230 105 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 ZNF79Q15937 498 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 CEACAM21Q3KPI0 293 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 C6orf201Q7Z4U5 140 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 CALHM1Q8IU99 346 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 NUDT3O95989 172 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 ASAH2BP0C7U1 165 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 FAM78BQ5VT40 261 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 PRSS50Q9UI38 385 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 NKX2-8O15522 239 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 ZNF253O75346 499 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 GAPDHP04406 335 aaKnown RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 SOD3P08294 240 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 FAM106CPP0CH98 169 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 SMIM10L1P0DMW3 83 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 Q1RN00 199 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 RSPO4Q2I0M5 234 aaPredicted RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 HIKESHIQ53FT3 197 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 FAAP20Q6NZ36 180 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 SLC35E3Q7Z769 313 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 OR1L8Q8NGR8 309 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 SMIM10Q96HG1 83 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 LINC00470Q9BZP3 86 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 TECRQ9NZ01 308 aaKnown RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 TDRD15B5MCY1 1934 aaKnown RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 F12P00748 615 aaPredicted RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 FSTP19883 344 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 BTF3P20290 206 aaKnown RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 P2RY1P47900 373 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 C8orf82Q6P1X6 216 aaPredicted RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 TNFSF18Q9UNG2 199 aa11.11□□□□□ -0.63
USP40-201ENST00000251722 PRRC2BQ5JSZ5 2229 aaKnown RBP11.11□□□□□ -0.63
USP40-201ENST00000251722 SMCHD1A6NHR9 2005 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 ANKRD20A5PA0PJZ0 165 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 CFDP00746 253 aaPredicted RBP11.1□□□□□ -0.63
USP40-201ENST00000251722 RPEL1Q2QD12 228 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 FNDC7Q5VTL7 733 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 OR1K1Q8NGR3 316 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 TMEM45BQ96B21 275 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 ZNF714Q96N38 554 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 PSMG3Q9BT73 122 aaPredicted RBP11.1□□□□□ -0.63
USP40-201ENST00000251722 MAGT1Q9H0U3 335 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 LOC285556D6RIA3 1793 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 SERTM2A0A1B0GWG4 89 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 CDIPTO14735 213 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 LDLRAD4O15165 306 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 BCL3P20749 454 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 SNAI3Q3KNW1 292 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 ZNF260Q3ZCT1 412 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 KHDC3LQ587J8 217 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 MRPS18CQ9Y3D5 142 aaKnown RBP11.1□□□□□ -0.63
USP40-201ENST00000251722 SOX21Q9Y651 276 aaPredicted RBP11.1□□□□□ -0.63
USP40-201ENST00000251722 PARP14Q460N5 1801 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 B9A039 149 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 VDAC1P21796 283 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 GAGE1Q13065 139 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 PCOLCEQ15113 449 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 C3AR1Q16581 482 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 SLC25A34Q6PIV7 304 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 C1orf162Q8NEQ5 155 aaPredicted RBP11.1□□□□□ -0.63
USP40-201ENST00000251722 HSPB9Q9BQS6 159 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 MANBALQ9NQG1 85 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 GPR27Q9NS67 375 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 KLK11Q9UBX7 282 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 OR2W1Q9Y3N9 320 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 C9orf170A2RU37 121 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 PI3P19957 117 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 OR13C6PQ8NH95 151 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 TMEM208Q9BTX3 173 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 CACNG5Q9UF02 275 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 MYO10Q9HD67 2058 aa11.1□□□□□ -0.63
USP40-201ENST00000251722 FBLL1A6NHQ2 334 aaKnown RBP11.09□□□□□ -0.63
USP40-201ENST00000251722 OR4C45A6NMZ5 311 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 HPRT1P00492 218 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 CA2P00918 260 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 HIST1H1EP10412 219 aaKnown RBP11.09□□□□□ -0.63
USP40-201ENST00000251722 DHRS2Q13268 280 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 PLAC9Q5JTB6 97 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 RFESDQ8TAC1 157 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 DYNLRB2Q8TF09 96 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 A0A1B0GU03 582 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 RIPPLY3P57055 190 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 ZNF716A6NP11 495 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 TRGC1P0CF51 173 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 CCL2P13500 99 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 TNFSF10P50591 281 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 TSPO2Q5TGU0 170 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 UCN2Q96RP3 112 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 NUP205Q92621 2012 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 PRR19A6NJB7 356 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms