RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CASQ2O14958 399 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 CASC3O15234 703 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 POLR3GO15318 223 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 SC5DO75845 299 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 CRYGCP07315 174 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ESDP10768 282 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 NQO1P15559 274 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ZNF3P17036 446 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 BGNP21810 368 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 CD24P25063 80 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 CRYBB3P26998 211 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 PYCR1P32322 319 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 OPRM1P35372 400 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 PEX19P40855 299 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 CD200P41217 278 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 MAGEA12P43365 314 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RPL27AP46776 148 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 DAPP51397 102 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RAP1GDS1P52306 607 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 AQP5P55064 265 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RAB38P57729 211 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RAB2AP61019 212 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RPL26P61254 145 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 HBG1P69891 147 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 HBG2P69892 147 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 DEFA6Q01524 100 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ZNF90Q03938 601 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RELAQ04206 551 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 TSPAN31Q12999 210 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 NNATQ16517 81 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 PSG3Q16557 428 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 MOGQ16653 247 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 Q1T7F1 81 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 LGALS9BQ3B8N2 356 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 PABPC1L2AQ5JQF8 200 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 FAM162BQ5T6X4 162 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 HENMT1Q5T8I9 393 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 THOC7Q6I9Y2 204 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 LAMTOR1Q6IAA8 161 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 OR10K2Q6IF99 312 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 FAHD1Q6P587 224 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 AGTRAPQ6RW13 159 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RASL11AQ6T310 242 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 DGAT2L6Q6ZPD8 337 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 OTUD6AQ7L8S5 288 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 GLT6D1Q7Z4J2 308 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 SYS1Q8N2H4 156 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 SLC35F6Q8N357 371 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 FAM19A2Q8N3H0 131 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 C10orf126Q8N4M7 172 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 OR51L1Q8NGJ5 315 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ZNRF2Q8NHG8 242 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 FNDC9Q8TBE3 224 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 SPPL2BQ8TCT7 592 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 DOK4Q8TEW6 326 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 CYGBQ8WWM9 190 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 GTF2H4Q92759 462 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ZMYND19Q96E35 227 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ZNF396Q96N95 335 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ODF3Q96PU9 254 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 BEX2Q9BXY8 128 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 POTEKPQ9BYX7 375 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 BLZF1Q9H2G9 400 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 FBXL15Q9H469 300 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RGCCQ9H4X1 137 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 METTL17Q9H7H0 456 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 MRPL22Q9NWU5 206 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 BABAM2Q9NXR7 383 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 GLS2Q9UI32 602 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 FBXL3Q9UKT7 428 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RABL2BQ9UNT1 228 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RPL26L1Q9UNX3 145 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 POMPQ9Y244 141 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 KLK5Q9Y337 293 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 RRP15Q9Y3B9 282 aaKnown RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 WASHC3Q9Y3C0 194 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 SOX21Q9Y651 276 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 V9GYY9 64 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 HERC1Q15751 4861 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 PIEZO1Q92508 2521 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 ALMS1Q8TCU4 4167 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 TMEM131Q92545 1883 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 HRNRQ86YZ3 2850 aaPredicted RBP-0.06□□□□□ -2.42
VPS35-212ENST00000640313 MICAL3Q7RTP6 2002 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 SCN9AQ15858 1988 aa-0.06□□□□□ -2.42
VPS35-212ENST00000640313 MIA3Q5JRA6 1907 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TTC41PQ6P2S7 1318 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 LRP1BQ9NZR2 4599 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 HSPG2P98160 4391 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 IGHV3-64A0A075B6Q5 118 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 IGKV2-40A0A087WW87 121 aaPredicted RBP-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TRGV5A0A0B4J1U4 118 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TRAV8-2A0A0B4J237 113 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TRAV41A0A0B4J266 112 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 A0A1B0GX12 115 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 A0A1W2PPV4 95 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 A0A1W2PQD3 144 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 GSTTP1A0A1W2PQM5 241 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 TMEM235A6NFC5 223 aa-0.07□□□□□ -2.42
VPS35-212ENST00000640313 NCF1BA6NI72 391 aaPredicted RBP-0.07□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms