RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 RAB11BQ15907 218 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 KHDC1LQ5JSQ8 128 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 SIGIRRQ6IA17 410 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 THNSL2Q86YJ6 484 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 OR6M1Q8NGM8 313 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 CITED2Q99967 270 aaPredicted RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 OCSTAMPQ9BR26 566 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 URM1Q9BTM9 101 aaKnown RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 FAAP24Q9BTP7 215 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 KCNK15Q9H427 330 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 Q9H521 79 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 OR2S2Q9NQN1 319 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 PLEKHJ1Q9NW61 149 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 AURKAIP1Q9NWT8 199 aaPredicted RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 IGHV1-3A0A0C4DH29 117 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 BPNT1O95861 308 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 ARSBP15848 533 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 FABP5Q01469 135 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 TMEM30BQ3MIR4 351 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 TMEM91Q6ZNR0 172 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 ZNF367Q7RTV3 350 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 C6orf201Q7Z4U5 140 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 OR52L2PQ8NGH6 319 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 R3HDM4Q96D70 268 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 SULT4A1Q9BR01 284 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 WNT10AQ9GZT5 417 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 ACOT13Q9NPJ3 140 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 ABRACLQ9P1F3 81 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 COL7A1Q02388 2944 aa9.26□□□□□ -0.93
CLN3-257ENST00000637110 TCRBV4S1A1TA0A5B7 111 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 SLC22A1O15245 554 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 SLC31A2O15432 143 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 SC5DO75845 299 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 CHATP28329 748 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 ZNF816Q0VGE8 651 aaPredicted RBP9.25□□□□□ -0.93
CLN3-257ENST00000637110 C11orf87Q6NUJ2 197 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 NDUFA11Q86Y39 141 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 TGIF2LXQ8IUE1 241 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 LINC00311Q8N616 119 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 OR4F17Q8NGA8 305 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 OR4X2Q8NGF9 303 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 OR2T10Q8NGZ9 312 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 MRPL30Q8TCC3 161 aaKnown RBP9.25□□□□□ -0.93
CLN3-257ENST00000637110 IL1F10Q8WWZ1 152 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 GALMQ96C23 342 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 CYYR1Q96J86 154 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 OR4F4Q96R69 305 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 NICN1Q9BSH3 213 aa9.25□□□□□ -0.93
CLN3-257ENST00000637110 FAM90A9PA6NNJ1 464 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 SERPINE3A8MV23 424 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 TMEM14DPA8MWL7 114 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 SLC17A2O00624 439 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 PDCD5O14737 125 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 RGS11O94810 467 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 PF4V1P10720 104 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 MYL9P24844 172 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 RANBP1P43487 201 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 PSMD7P51665 324 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 CLDN12P56749 244 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 UNC119Q13432 240 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 TBCEQ15813 527 aaPredicted RBP9.24□□□□□ -0.93
CLN3-257ENST00000637110 Q3ZCU0 254 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 MORN2Q502X0 79 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 CT45A1Q5HYN5 189 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 HES5Q5TA89 166 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 SLC25A48Q6ZT89 311 aaKnown RBP9.24□□□□□ -0.93
CLN3-257ENST00000637110 OR2W3Q7Z3T1 314 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 C5orf24Q7Z6I8 188 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 GAPTQ8N292 157 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 SVOPQ8N4V2 548 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 C8orf31Q8N9H6 132 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 OR51D1Q8NGF3 324 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 CT45A3Q8NHU0 189 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 RTN4IP1Q8WWV3 396 aaPredicted RBP9.24□□□□□ -0.93
CLN3-257ENST00000637110 EAF1Q96JC9 268 aaPredicted RBP9.24□□□□□ -0.93
CLN3-257ENST00000637110 TM2D1Q9BX74 207 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 MBNL3Q9NUK0 354 aaKnown RBP9.24□□□□□ -0.93
CLN3-257ENST00000637110 STEAP1Q9UHE8 339 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 LRRC42Q9Y546 428 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 V9GY05 133 aa9.24□□□□□ -0.93
CLN3-257ENST00000637110 PSMB11A5LHX3 300 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 SOCS1O15524 211 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 FGF16O43320 207 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 TXNL1O43396 289 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 AMY1AP04745 511 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 AMY2AP04746 511 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 PPP1CCP36873 323 aaKnown RBP9.23□□□□□ -0.93
CLN3-257ENST00000637110 VEGFCP49767 419 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 ZNF134P52741 427 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 GABARAPL2P60520 117 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 GNMTQ14749 295 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 OXLD1Q5BKU9 147 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 C5orf56Q8N8D9 126 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 FAM3DQ96BQ1 224 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 GFI1Q99684 422 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 RASL11BQ9BPW5 248 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 ABHD14AQ9BUJ0 271 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 LPAR5Q9H1C0 372 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 JPT1Q9UK76 154 aa9.23□□□□□ -0.93
CLN3-257ENST00000637110 DENRO43583 198 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms