RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 C17orf58Q2M2W7 97 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 OR11H7Q8NGC8 314 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 OR52L2PQ8NGH6 319 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 CCL19Q99731 98 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 RAB9BQ9NP90 201 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 UBE2J1Q9Y385 318 aaPredicted RBP15.24■□□□□ 0.03
CLN3-254ENST00000637050 KIAA2026Q5HYC2 2103 aa15.24■□□□□ 0.03
CLN3-254ENST00000637050 KBTBD11-OT1A0A1B0GTJ5 212 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 ZNF729A6NN14 1252 aaPredicted RBP15.23■□□□□ 0.03
CLN3-254ENST00000637050 GNRHRP30968 328 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 PIGPP57054 158 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 RPL31P62899 125 aaKnown RBP15.23■□□□□ 0.03
CLN3-254ENST00000637050 GNMTQ14749 295 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 ZNF841Q6ZN19 808 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 OR10V1Q8NGI7 309 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 SECTM1Q8WVN6 248 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 ST6GAL2Q96JF0 529 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 SLC5A7Q9GZV3 580 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 PARP12Q9H0J9 701 aaKnown RBP15.23■□□□□ 0.03
CLN3-254ENST00000637050 OR2S2Q9NQN1 319 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 SLC2A9Q9NRM0 540 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 C19orf12Q9NSK7 152 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 TAS2R3Q9NYW6 316 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 LPAR3Q9UBY5 353 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 CLN8Q9UBY8 286 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 MIOXQ9UGB7 285 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 DSCAML1Q8TD84 2053 aa15.23■□□□□ 0.03
CLN3-254ENST00000637050 CRYM-AS1A6NIL9 109 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 SFT2D2O95562 160 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 DUS4LO95620 317 aaKnown RBP15.22■□□□□ 0.03
CLN3-254ENST00000637050 VAMP1P23763 118 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 LUMP51884 338 aaPredicted RBP15.22■□□□□ 0.03
CLN3-254ENST00000637050 ABCA11PQ4W5N1 156 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 C12orf45Q8N5I9 185 aaPredicted RBP15.22■□□□□ 0.03
CLN3-254ENST00000637050 MITD1Q8WV92 249 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 NINJ1Q92982 152 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 JPT1Q9UK76 154 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 IGHV4-39P01824 125 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 WNT2P09544 360 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 PPP1CCP36873 323 aaKnown RBP15.22■□□□□ 0.03
CLN3-254ENST00000637050 LOXL3P58215 753 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 FAM53AQ6NSI3 398 aaPredicted RBP15.22■□□□□ 0.03
CLN3-254ENST00000637050 ZNF818PQ6ZRF7 136 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 SPICQ8N5J4 248 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 H1FXQ92522 213 aaKnown RBP15.22■□□□□ 0.03
CLN3-254ENST00000637050 CCL28Q9NRJ3 127 aa15.22■□□□□ 0.03
CLN3-254ENST00000637050 DCHS2Q6V1P9 2916 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 GPR31O00270 319 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 GPR37O15354 613 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 CXCL3P19876 107 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 GPR6P46095 362 aaPredicted RBP15.21■□□□□ 0.03
CLN3-254ENST00000637050 RND3P61587 244 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 ZNF273Q14593 569 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 PHLDA2Q53GA4 152 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 TMEM200BQ69YZ2 307 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 SGPP2Q8IWX5 399 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 FAM185AQ8N0U4 392 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 OR2AK2Q8NG84 335 aa15.21■□□□□ 0.03
CLN3-254ENST00000637050 RTN4IP1Q8WWV3 396 aaPredicted RBP15.21■□□□□ 0.03
CLN3-254ENST00000637050 NEIL1Q96FI4 390 aaPredicted RBP15.21■□□□□ 0.03
CLN3-254ENST00000637050 SPTAN1Q13813 2472 aaKnown RBP15.21■□□□□ 0.02
CLN3-254ENST00000637050 IGHV3-43A0A0B4J1X8 118 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 A8MV72 311 aaPredicted RBP15.2■□□□□ 0.02
CLN3-254ENST00000637050 IGHV3-43DP0DP04 118 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 CD83Q01151 205 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 TMEM30BQ3MIR4 351 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 NLRC3Q7RTR2 1065 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 IQCF2Q8IXL9 164 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 CCDC71LQ8N9Z2 235 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 OR8B3Q8NGG8 313 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 CASTOR1Q8WTX7 329 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 OR8B2Q96RD0 313 aa15.2■□□□□ 0.02
CLN3-254ENST00000637050 RANGRFQ9HD47 186 aaPredicted RBP15.2■□□□□ 0.02
CLN3-254ENST00000637050 TRBV23-1A0A0A0MS06 115 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 TEX13DA0A0J9YY54 714 aaPredicted RBP15.19■□□□□ 0.02
CLN3-254ENST00000637050 YPEL1O60688 119 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 OR8U9P0C7N5 309 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 OMGP23515 440 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 COL8A1P27658 744 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 CD34P28906 385 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 LTC4SQ16873 150 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 MORN2Q502X0 79 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 BVESQ8NE79 360 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 OR8U1Q8NH10 309 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 GALNT14Q96FL9 552 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 YPEL2Q96QA6 119 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 PHB2Q99623 299 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 GAL3ST2Q9H3Q3 398 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 NAA60Q9H7X0 242 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 PATZ1Q9HBE1 687 aaKnown RBP15.19■□□□□ 0.02
CLN3-254ENST00000637050 IDI2-AS1Q9NZ38 188 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 GNG12Q9UBI6 72 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 MGAT4CQ9UBM8 478 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 A0A0B4J2A0 478 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 F5H0A9 414 aaPredicted RBP15.19■□□□□ 0.02
CLN3-254ENST00000637050 HSD17B6O14756 317 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 MPPED1O15442 326 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 IFNA2P01563 188 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 IGLV2-14P01704 120 aa15.19■□□□□ 0.02
CLN3-254ENST00000637050 SLC9A3R2Q15599 337 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms