RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 P2RY2P41231 377 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 GPR6P46095 362 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-213ENST00000636759 C2orf27AQ580R0 203 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 SSBP4Q9BWG4 385 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-213ENST00000636759 PLA2G2FQ9BZM2 168 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 MMP17Q9ULZ9 603 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-213ENST00000636759 TMEM131Q92545 1883 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 ALG1L2C9J202 215 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 J3QR06 171 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF205O95201 554 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 C3orf79P0CE67 100 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 UCP1P25874 307 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 DRD3P35462 400 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 TMEM187Q14656 261 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 CD226Q15762 336 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 HLA-BQ31612 363 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 POM121L1PQ3SYA9 428 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 WDR82Q6UXN9 313 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 C19orf35Q6ZS72 473 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 MRPL21Q7Z2W9 205 aaKnown RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 RD3Q7Z3Z2 195 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 RTN4RL2Q86UN3 420 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 SHISA5Q8N114 240 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 ZIC4Q8N9L1 334 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 OR51T1Q8NGJ9 327 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 OR5D14Q8NGL3 314 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 MBD3L1Q8WWY6 194 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 DEC1Q9P2X7 70 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 MUC21A0A0G2JKD1 596 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 MUC21A0A140T8X8 626 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF850A8MQ14 1090 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 NPIPA5E9PKD4 350 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 NPIPA3F8WFD2 350 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 CD5LO43866 347 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF83P51522 516 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 YPEL3P61236 119 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 C5orf64Q2M2E5 130 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 PLAC9Q5JTB6 97 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 MUC21Q5SSG8 566 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 TSPO2Q5TGU0 170 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 SHISA2Q6UWI4 295 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 AMZ2Q86W34 360 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 CCDC71LQ8N9Z2 235 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 NINJ1Q92982 152 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 PECRQ9BY49 303 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 C6orf106Q9H6K1 298 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 ANAPC10Q9UM13 185 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 NPIPA1Q9UND3 350 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 SERINC4A6NH21 518 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 EPOPA6NHQ4 379 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 TMEM14DPA8MWL7 114 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 SOX1O00570 391 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 FOXS1O43638 330 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 FBLP22087 321 aaKnown RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 HNRNPA2B1P22626 353 aaKnown RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 MDH2P40926 338 aaKnown RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 THBS3P49746 956 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 FABP6P51161 128 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 RELBQ01201 579 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 FOXL1Q12952 345 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 FHL5Q5TD97 284 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 RAB42Q8N4Z0 105 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 OR10V1Q8NGI7 309 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 OR5A2Q8NGI9 324 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 DOK4Q8TEW6 326 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 SPSB1Q96BD6 273 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 NEIL1Q96FI4 390 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 UHRF2Q96PU4 802 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 LRRC61Q9BV99 259 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 OR10A2Q9H208 303 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 GEMIN7Q9H840 131 aaKnown RBP5.89□□□□□ -1.47
SCN1A-213ENST00000636759 GPR27Q9NS67 375 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 THYN1Q9P016 225 aa5.89□□□□□ -1.47
SCN1A-213ENST00000636759 TRAV8-6A0A0B4J262 113 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 PDE6DO43924 150 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 RAD51DO75771 328 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SMIM17P0DL12 118 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 BLVRBP30043 206 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 RRADP55042 308 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 Q0VG73 95 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 Q56UQ5 140 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 FLVCR1-AS1Q8TAF5 88 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 HOXB13Q92826 284 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 DAZLQ92904 295 aaKnown RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SPACA5Q96QH8 159 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 OR2V2Q96R30 315 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 PSMG3Q9BT73 122 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 WDR61Q9GZS3 305 aaKnown RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 CENPMQ9NSP4 180 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 TMEM74BQ9NUR3 256 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 TP53TG3Q9ULZ0 132 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 R4GMQ9 66 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 NKX2-6A6NCS4 301 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SERPINE2P07093 398 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 DRD1P21728 446 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 CD1BP29016 333 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 LHX2P50458 406 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF133P52736 654 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 ARG2P78540 354 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms