RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TCRBV3S1A0A5B6 114 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 C3orf80F5H4A9 247 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 LIM2P55344 173 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 LINC00299Q6ZSB3 139 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 LRTM2Q8N967 370 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SYT11Q9BT88 431 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 IFT22Q9H7X7 185 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TCF20Q9UGU0 1960 aaKnown RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 K7N7A8 449 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ARNTLO00327 626 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 NME4O00746 187 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 HTN3P15516 51 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ATF1P18846 271 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TIAL1Q01085 375 aaKnown RBP eCLIP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 C18orf21Q32NC0 220 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 GPR146Q96CH1 333 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ZDHHC18Q9NUE0 388 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 IL19Q9UHD0 177 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ZGLP1P0C6A0 271 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 PAX2Q02962 417 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 FAM27D1Q5T7N8 215 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM255BQ8WV15 326 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ELSPBP1Q96BH3 223 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 NRSN2Q9GZP1 204 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 HSPB7Q9UBY9 170 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SLC17A3O00476 420 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 GLI4P10075 376 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 RBM45Q8IUH3 476 aaKnown RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 CADM4Q8NFZ8 388 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 RNF133Q8WVZ7 376 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 PHF7Q9BWX1 381 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SPCS1Q9Y6A9 102 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 PARP14Q460N5 1801 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 RNF225M0QZC1 329 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 FCARP24071 287 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 FAM78AQ5JUQ0 283 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 FAM74A4Q5TZK3 123 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 WDFY1Q8IWB7 410 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 CLEC4DQ8WXI8 215 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 C10orf35Q96D05 121 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PDXPQ96GD0 296 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 ALKBH3Q96Q83 286 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 JPT2Q9H910 190 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 ARHGAP21Q5T5U3 1957 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 MON2Q7Z3U7 1717 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TGIF2-C20orf24A0A0A6YYL0 155 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TRDCB7Z8K6 153 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 NDUFS5O43920 106 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 GZMHP20718 246 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TMPRSS3P57727 454 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 NKG7Q16617 165 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 CENPVQ7Z7K6 275 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 CXorf67Q86X51 503 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PTPMT1Q8WUK0 201 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PCGF1Q9BSM1 259 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 RTN4RQ9BZR6 473 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 ARRDC1-AS1Q9H2J1 176 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 YAE1D1Q9NRH1 226 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 SPANXA1Q9NS26 97 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 LAMTOR3Q9UHA4 124 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 HYPMO75409 117 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PSG2P11465 335 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 SRFP11831 508 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 ZP3P21754 424 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 FAM189BP81408 668 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 SYPL1Q16563 259 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PYCR3Q53H96 274 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 MRGPREQ86SM8 312 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PFN4Q8NHR9 129 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM45BQ96B21 275 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 FITM1A5D6W6 292 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 IFITM5A6NNB3 132 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 NAT1P18440 290 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 LPAR6P43657 344 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM170BQ5T4T1 132 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 HSD11B1LQ7Z5J1 315 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 MAFAQ8NHW3 353 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PDLIM5Q96HC4 596 aaKnown RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 NAA50Q9GZZ1 169 aaKnown RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 IGSF5Q9NSI5 407 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 HOXA6P31267 233 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 ERVK11-1P61568 191 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 RNF182Q8N6D2 247 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM158Q8WZ71 300 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 HS3ST2Q9Y278 367 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 F11RQ9Y624 299 aaKnown RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM131Q92545 1883 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 C3orf85A0A1B0GTC6 90 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 POM121BA6NF01 834 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 SLC17A2O00624 439 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 TYROBPO43914 113 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 CD8AP01732 235 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 SAA1P0DJI8 122 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PLNP26678 52 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 EPHA8P29322 1005 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 PPICP45877 212 aa5.32□□□□□ -1.56
SCN1A-212ENST00000636194 RPS4XP62701 263 aaKnown RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 MRPS11P82912 194 aaKnown RBP5.32□□□□□ -1.56
SCN1A-212ENST00000636194 ATP5G2Q06055 141 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms