RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 PPP1R3CQ9UQK1 317 aa16.47■□□□□ 0.23
CHRNA4-209ENST00000627000 RBM7Q9Y580 266 aaKnown RBP16.47■□□□□ 0.23
CHRNA4-209ENST00000627000 IGKV1D-17A0A075B6S4 117 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 IFNL4K9M1U5 179 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 PRDX2P32119 198 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 KRBOX4Q5JUW0 171 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 ELOVL5Q9NYP7 299 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 JKAMPQ9P055 326 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 KCNS2Q9ULS6 477 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 CACNA1DQ01668 2161 aa16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 TLN1Q9Y490 2541 aaKnown RBP16.46■□□□□ 0.23
CHRNA4-209ENST00000627000 TSPAN4O14817 238 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 ADAM20O43506 726 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 THBDP07204 575 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 RPL7L1Q6DKI1 246 aaKnown RBP16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 OR52L2PQ8NGH6 319 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 OR5D13Q8NGL4 314 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 BSCL2Q96G97 398 aaPredicted RBP16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 RCL1Q9Y2P8 373 aaKnown RBP16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 E5RGE8 158 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 HBZP02008 142 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 RPS23P62266 143 aaKnown RBP16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 GNMTQ14749 295 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 FAM201AQ5SY85 155 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 DMBX1Q8NFW5 382 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 OR13A1Q8NGR1 328 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 OR10Z1Q8NGY1 313 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 TMED6Q8WW62 240 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 DCTN5Q9BTE1 182 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 SMIM3Q9BZL3 60 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 DNTTIP1Q9H147 329 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 ESRP2Q9H6T0 727 aaKnown RBP16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 NSG2Q9Y328 171 aa16.45■□□□□ 0.22
CHRNA4-209ENST00000627000 DPRXA6NFQ7 191 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 OOEPA6NGQ2 149 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 ATXN7O15265 892 aaPredicted RBP16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 ST8SIA3O43173 380 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 NMSQ5H8A3 153 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 ERGIC1Q969X5 290 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 GALMQ96C23 342 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 BARX1Q9HBU1 254 aaPredicted RBP16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 FBXL17Q9UF56 701 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 ZNF737O75373 536 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 S100GP29377 79 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 SSTR5P35346 364 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 TMEM33P57088 247 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 EDDM3AQ14507 147 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 TMEM108Q6UXF1 575 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 COQ3Q9NZJ6 369 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 POMT1Q9Y6A1 747 aa16.44■□□□□ 0.22
CHRNA4-209ENST00000627000 A0A0G2JRQ6 117 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 ABCD4O14678 606 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 IL2RGP31785 369 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 CFHR2P36980 270 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 RNF150Q9ULK6 438 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 SPTBN4Q9H254 2564 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 TRIM77I1YAP6 450 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 IGHV1-46P01743 117 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 VDAC1P21796 283 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 CXorf66Q5JRM2 361 aaPredicted RBP16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 DRAM1Q8N682 238 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 RFESDQ8TAC1 157 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 PLEKHA2Q9HB19 425 aa16.43■□□□□ 0.22
CHRNA4-209ENST00000627000 NXPH3O95157 252 aa16.42■□□□□ 0.22
CHRNA4-209ENST00000627000 LHBP01229 141 aa16.42■□□□□ 0.22
CHRNA4-209ENST00000627000 SELENOVP59797 346 aa16.42■□□□□ 0.22
CHRNA4-209ENST00000627000 POLR2GP62487 172 aaKnown RBP eCLIP16.42■□□□□ 0.22
CHRNA4-209ENST00000627000 NUP37Q8NFH4 326 aa16.42■□□□□ 0.22
CHRNA4-209ENST00000627000 AKR1E2Q96JD6 320 aa16.42■□□□□ 0.22
CHRNA4-209ENST00000627000 DUXBA0A1W2PPF3 345 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 LGALS8O00214 317 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 IGKV1-39P01597 117 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 IGKV1D-39P04432 117 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 ZNF16P17020 682 aaPredicted RBP16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 CD80P33681 288 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 NKX2-1P43699 371 aaPredicted RBP16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 UCNP55089 124 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 TNFAIP6P98066 277 aaPredicted RBP16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 RBPJQ06330 500 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 BSPH1Q075Z2 132 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 SPIN2AQ99865 258 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 SPIN2BQ9BPZ2 258 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 MAGT1Q9H0U3 335 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 IGHV3-43A0A0B4J1X8 118 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 TAAR5O14804 337 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 SERPINE2P07093 398 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 IGHV3-43DP0DP04 118 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 PTAFRP25105 342 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 PPP1CCP36873 323 aaKnown RBP16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 IZUMO4Q1ZYL8 232 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 HSD17B13Q7Z5P4 300 aaPredicted RBP16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 ZNRF1Q8ND25 227 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 RND1Q92730 232 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 IL22RA2Q969J5 263 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 C11orf1Q9H5F2 150 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 ZFP57Q9NU63 452 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 DSCAMO60469 2012 aa16.41■□□□□ 0.22
CHRNA4-209ENST00000627000 NBEAQ8NFP9 2946 aa16.4■□□□□ 0.22
CHRNA4-209ENST00000627000 ARL11Q969Q4 196 aa16.4■□□□□ 0.22
CHRNA4-209ENST00000627000 C5orf30Q96GV9 206 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms