RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 OR2A7Q96R45 310 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 PPIAL4AQ9Y536 164 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 AGPAT2O15120 278 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 CA7P43166 264 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 EIF5AP63241 154 aaKnown RBP13.27□□□□□ -0.29
CPSF1-213ENST00000620219 SHEQ5VZ18 495 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 CRIP3Q6Q6R5 217 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 HSD17B11Q8NBQ5 300 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 POC1AQ8NBT0 407 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 SUCNR1Q9BXA5 334 aa13.27□□□□□ -0.29
CPSF1-213ENST00000620219 PRSS44E7EML9 344 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 ERVH48-1M5A8F1 160 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 OR2F2O95006 317 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 CLDN1O95832 211 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 SPAG16Q8N0X2 631 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 ZNF665Q9H7R5 613 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 ZDHHC8Q9ULC8 765 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 CLDN14O95500 239 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 ZNF616Q08AN1 781 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 SURF2Q15527 256 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-213ENST00000620219 IZUMO4Q1ZYL8 232 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 TMED6Q8WW62 240 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 YLPM1P49750 1951 aaKnown RBP13.26□□□□□ -0.29
CPSF1-213ENST00000620219 BORCS7-ASMTA0A0B4J1R7 106 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 SSC4DQ8WTU2 575 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 MYOZ1Q9NP98 299 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-213ENST00000620219 ENY2Q9NPA8 101 aa13.26□□□□□ -0.29
CPSF1-213ENST00000620219 DOCK11Q5JSL3 2073 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 A0A0D9SG52 128 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 A0A1W2PRD5 423 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 A0A1W2PRF3 423 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 A0A1W2PRM7 423 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 PLAUP00749 431 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 FAHD2BQ6P2I3 314 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-213ENST00000620219 ACOT7LQ6ZUV0 252 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 PDZD9Q8IXQ8 264 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 EDARADDQ8WWZ3 215 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 RNASE6Q93091 150 aaKnown RBP13.25□□□□□ -0.29
CPSF1-213ENST00000620219 FAHD2AQ96GK7 314 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 RAB18Q9NP72 206 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 TAS2R3Q9NYW6 316 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 PRELID3BQ9Y3B1 194 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 FCGR3BO75015 233 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 IGHV1-46P01743 117 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 SLC51BQ86UW2 128 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 LILRB2Q8N423 598 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 OR10X1Q8NGY0 326 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 PTPRBP23467 1997 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 ODAMA1E959 279 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 RPL31P62899 125 aaKnown RBP13.25□□□□□ -0.29
CPSF1-213ENST00000620219 AKR1C1Q04828 323 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 SPINK9Q5DT21 86 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 EIF5AL1Q6IS14 154 aaKnown RBP13.25□□□□□ -0.29
CPSF1-213ENST00000620219 ZNF818PQ6ZRF7 136 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 C22orf34Q6ZV56 151 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 MRPL30Q8TCC3 161 aaKnown RBP13.25□□□□□ -0.29
CPSF1-213ENST00000620219 OR5AC2Q9NZP5 309 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 KITLGP21583 273 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 TDGF1P3P51864 188 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 DCAF16Q9NXF7 216 aa13.25□□□□□ -0.29
CPSF1-213ENST00000620219 C17orf100A8MU93 164 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 MGST3O14880 152 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 EGR1P18146 543 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 SLC35G3Q8N808 338 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 OR5D13Q8NGL4 314 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 OR13A1Q8NGR1 328 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 MOB3AQ96BX8 217 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 LIME1Q9H400 295 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 LIN7CQ9NUP9 197 aaKnown RBP13.24□□□□□ -0.29
CPSF1-213ENST00000620219 OR6C3Q9NZP0 311 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 SLC25A10Q9UBX3 287 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-213ENST00000620219 C12orf77C9JDV5 145 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 TOR1AO14656 332 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 CA11O75493 328 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 CST7O76096 145 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 CD37P11049 281 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 RPS2P15880 293 aaKnown RBP13.24□□□□□ -0.29
CPSF1-213ENST00000620219 LPAR6P43657 344 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 C20orf204Q6ZNR8 217 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 LIAT1Q6ZQX7 453 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 H2BFWTQ7Z2G1 175 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 LRRC20Q8TCA0 184 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 GLYATL2Q8WU03 294 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 RAB1BQ9H0U4 201 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 LRRK2Q5S007 2527 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 MECP2P51608 486 aaKnown RBP13.24□□□□□ -0.29
CPSF1-213ENST00000620219 PRAMEF5Q5TYX0 476 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 ST6GALNAC3Q8NDV1 305 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 ST8SIA2Q92186 375 aa13.24□□□□□ -0.29
CPSF1-213ENST00000620219 IGKV1D-13A0A0B4J2D9 117 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 IGKV1-13P0DP09 117 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 GZMHP20718 246 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 ARHGDIBP52566 201 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 POLR2GP62487 172 aaKnown RBP eCLIP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 PRB3Q04118 309 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 OR8G2PQ6IF36 304 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 LY6HO94772 140 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 ATG12O94817 140 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 RPL12P30050 165 aaKnown RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 SUPT4H1P63272 117 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 240.7 ms