RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PTX4Q96A99 478 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 DCAF16Q9NXF7 216 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 A0A0U1RQV5 110 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 CRYGSP22914 178 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 PIGPP57054 158 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 IL15RAQ13261 267 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 CRIP3Q6Q6R5 217 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 C1QL4Q86Z23 238 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 LIME1Q9H400 295 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 OR6C6A6NF89 314 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 IFNA10P01566 189 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 RND3P61587 244 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 VAX1Q5SQQ9 334 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 OSGIN2Q9Y236 505 aa12.4□□□□□ -0.42
SHROOM1-208ENST00000617339 EREGO14944 169 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 MBP02144 154 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 MMP7P09237 267 aaPredicted RBP12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 TMEM217Q8N7C4 229 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 OR52M1Q8NGK5 317 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 ABHD5Q8WTS1 349 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 NANOS1Q8WY41 292 aaKnown RBP12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 EMG1Q92979 244 aaKnown RBP12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 MKRN2OSH3BPM6 223 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 ZNF880Q6PDB4 577 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 FBXW12Q6X9E4 464 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.39□□□□□ -0.434e-13■■■□□ 19
SHROOM1-208ENST00000617339 FAM24AA6NFZ4 105 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 SEC11BP0C7V7 166 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 LYPD6BQ8NI32 183 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 HPSE2Q8WWQ2 592 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 FAM210BQ96KR6 192 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 MAGT1Q9H0U3 335 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 V9GYS6 101 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 ABCA1O95477 2261 aa12.39□□□□□ -0.43
SHROOM1-208ENST00000617339 PCSK5Q92824 1860 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 PTBP3O95758 552 aaKnown RBP12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 OR5AC1P0C628 307 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 MMP9P14780 707 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 COMMD1Q8N668 190 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 NECAP1Q8NC96 275 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 EXTL1Q92935 676 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 NIPSNAP3BQ9BS92 247 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 LRFN3Q9BTN0 628 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 SPRR3Q9UBC9 169 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 FIGNL2A6NMB9 653 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 E5RGE8 158 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 HSD17B6O14756 317 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 RHBDL1O75783 438 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 P2RY1P47900 373 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 HIST2H3PS2Q5TEC6 136 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 MDP1Q86V88 176 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 SARAFQ96BY9 339 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 TMEM68Q96MH6 324 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 WFIKKN1Q96NZ8 548 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 NSG2Q9Y328 171 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 ZNF816-ZNF321PA0A0X1KG74 233 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 KALRNO60229 2985 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 MKXQ8IYA7 352 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 ANXA10Q9UJ72 324 aa12.38□□□□□ -0.43
SHROOM1-208ENST00000617339 PHF1O43189 567 aaPredicted RBP12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 IGHV3-13P01766 116 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 IGHV3-7P01780 117 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 CEBPDP49716 269 aaPredicted RBP12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 HERV-K104P61576 105 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 RUNX1Q01196 453 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 HIST1H2BLQ99880 126 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 PLEKHA2Q9HB19 425 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 WSB1Q9Y6I7 421 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 ZNF891A8MT65 544 aaPredicted RBP12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 SIRPB1O00241 398 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 ZNF728P0DKX0 622 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 EPHA1P21709 976 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 RAB11AP62491 216 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 Q96M66 194 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 YPEL4Q96NS1 127 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 OR2J1Q9GZK6 312 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 SLC25A31Q9H0C2 315 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 BCO1Q9HAY6 547 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 TRAPPC2LH3BP13 241 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 TIMM8AO60220 97 aaPredicted RBP12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 SCTP09683 121 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 COX5BP10606 129 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 CCL1P22362 96 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 GCH1P30793 250 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 OTX1P32242 354 aaPredicted RBP12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 TAS2R46P59540 309 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 IZUMO4Q1ZYL8 232 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 PLA2G2CQ5R387 149 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 DEFB108BQ8NET1 73 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 KCNS2Q9ULS6 477 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 KCNIP3Q9Y2W7 256 aa12.37□□□□□ -0.43
SHROOM1-208ENST00000617339 CST7O76096 145 aa12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 CNOT4O95628 575 aaKnown RBP12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 ZNF83P51522 516 aa12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 RPL23AP62750 156 aaKnown RBP12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 ABLIM2Q6H8Q1 611 aa12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 DBX2Q6ZNG2 339 aa12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 ZNF664Q8N3J9 261 aa12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 RTN4IP1Q8WWV3 396 aaPredicted RBP12.36□□□□□ -0.43
SHROOM1-208ENST00000617339 TVP23CQ96ET8 276 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms