RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TMEM155Q4W5P6 130 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 LRRC10Q5BKY1 277 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 LYG2Q86SG7 212 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 AKAP14Q86UN6 197 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 SLC38A6Q8IZM9 456 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 ZFAND1Q8TCF1 268 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 DACT3Q96B18 629 aaPredicted RBP11.79□□□□□ -0.52
USP39-220ENST00000613444 MED28Q9H204 178 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 CALYQ9NYX4 217 aa11.79□□□□□ -0.52
USP39-220ENST00000613444 KBTBD11-OT1A0A1B0GTJ5 212 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 SPINT2O43291 252 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 CXCL3P19876 107 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 MEF2CQ06413 473 aaPredicted RBP11.78□□□□□ -0.52
USP39-220ENST00000613444 RAB1CQ92928 201 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 CCL19Q99731 98 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 CLN8Q9UBY8 286 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 C14orf166Q9Y224 244 aaKnown RBP11.78□□□□□ -0.52
USP39-220ENST00000613444 LINC00312Q9Y6C7 94 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 CSMD2Q7Z408 3487 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 PTPN13Q12923 2485 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 TRGV10A0A0A0MS01 117 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 HSPA12AO43301 675 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 IGLV2-14P01704 120 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 IGHV4-39P01824 125 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 PIGPP57054 158 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 RPL31P62899 125 aaKnown RBP11.78□□□□□ -0.52
USP39-220ENST00000613444 ZNF273Q14593 569 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 SECTM1Q8WVN6 248 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 TIMD4Q96H15 378 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 OR2S2Q9NQN1 319 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 SLC2A9Q9NRM0 540 aa11.78□□□□□ -0.52
USP39-220ENST00000613444 ARHGAP32A7KAX9 2087 aa11.77□□□□□ -0.52
USP39-220ENST00000613444 IGHV3-43A0A0B4J1X8 118 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 hADV38S2A0JD32 116 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 CRYM-AS1A6NIL9 109 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 A8MV72 311 aaPredicted RBP11.77□□□□□ -0.53
USP39-220ENST00000613444 SSNA1O43805 119 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 CCNKO75909 580 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 WNT2P09544 360 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 IGHV3-43DP0DP04 118 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 OMGP23515 440 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 PPP1CCP36873 323 aaKnown RBP11.77□□□□□ -0.53
USP39-220ENST00000613444 C2orf68Q2NKX9 166 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 UTF1Q5T230 341 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 TMEM200BQ69YZ2 307 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 ZNF818PQ6ZRF7 136 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 MITD1Q8WV92 249 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 ZNF486Q96H40 463 aaPredicted RBP11.77□□□□□ -0.53
USP39-220ENST00000613444 SLC5A7Q9GZV3 580 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 CCL28Q9NRJ3 127 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 UBE2J1Q9Y385 318 aaPredicted RBP11.77□□□□□ -0.53
USP39-220ENST00000613444 ZNF729A6NN14 1252 aaPredicted RBP11.77□□□□□ -0.53
USP39-220ENST00000613444 SFT2D2O95562 160 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 DUS4LO95620 317 aaKnown RBP11.77□□□□□ -0.53
USP39-220ENST00000613444 PHLDA2Q53GA4 152 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 LPCAT3Q6P1A2 487 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 OR10V1Q8NGI7 309 aa11.77□□□□□ -0.53
USP39-220ENST00000613444 MMP23AO75900 390 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 VAMP1P23763 118 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 C12orf45Q8N5I9 185 aaPredicted RBP11.76□□□□□ -0.53
USP39-220ENST00000613444 SPICQ8N5J4 248 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 ZNF525Q8N782 197 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 OR2AK2Q8NG84 335 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 RTN4IP1Q8WWV3 396 aaPredicted RBP11.76□□□□□ -0.53
USP39-220ENST00000613444 NRGNQ92686 78 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 PPP1R14BQ96C90 147 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 FYTTD1Q96QD9 318 aaKnown RBP11.76□□□□□ -0.53
USP39-220ENST00000613444 RANGRFQ9HD47 186 aaPredicted RBP11.76□□□□□ -0.53
USP39-220ENST00000613444 TAS2R3Q9NYW6 316 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 MIOXQ9UGB7 285 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 JPT1Q9UK76 154 aa11.76□□□□□ -0.53
USP39-220ENST00000613444 F5H0A9 414 aaPredicted RBP11.75□□□□□ -0.53
USP39-220ENST00000613444 GPR31O00270 319 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 LUMP51884 338 aaPredicted RBP11.75□□□□□ -0.53
USP39-220ENST00000613444 RND3P61587 244 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 CD83Q01151 205 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 LTC4SQ16873 150 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 MORN2Q502X0 79 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 H1FXQ92522 213 aaKnown RBP11.75□□□□□ -0.53
USP39-220ENST00000613444 NEIL1Q96FI4 390 aaPredicted RBP11.75□□□□□ -0.53
USP39-220ENST00000613444 PSMG3-AS1Q96PY0 264 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 AGMATQ9BSE5 352 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 DBX1A6NMT0 343 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 HSD17B6O14756 317 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 YPEL1O60688 119 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 OR8U9P0C7N5 309 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 CCL3L1P16619 93 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 GPR6P46095 362 aaPredicted RBP11.75□□□□□ -0.53
USP39-220ENST00000613444 DLX6P56179 175 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 SLC9A3R2Q15599 337 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 ANKRD55Q3KP44 614 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 ABCA11PQ4W5N1 156 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 BVESQ8NE79 360 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 OR8U1Q8NH10 309 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 CASTOR1Q8WTX7 329 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 GALNT14Q96FL9 552 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 YPEL2Q96QA6 119 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 NAA60Q9H7X0 242 aa11.75□□□□□ -0.53
USP39-220ENST00000613444 PATZ1Q9HBE1 687 aaKnown RBP11.75□□□□□ -0.53
USP39-220ENST00000613444 GFOD1Q9NXC2 390 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms